Factsheet for Bra019499.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67192	Canola	nucleus	95.12	73.24
CDX77848	Canola	nucleus	91.46	70.75
AT3G47180.1	Thale cress	cytosol	81.1	63.33
PGSC0003DMT400020398	Potato	nucleus	44.51	41.24
Solyc12g010500.1.1	Tomato	nucleus	43.9	40.22
VIT_18s0001g02280.t01	Wine grape	nucleus	49.39	39.13
KRH64669	Soybean	nucleus	47.56	38.61
KRH16389	Soybean	nucleus	48.17	38.54
KRH53246	Soybean	nucleus	42.07	37.7
KRH17980	Soybean	nucleus	45.73	36.95
Bra040450.1-P	Field mustard	nucleus	33.54	22.73
Bra024009.1-P	Field mustard	nucleus	20.73	19.43
Bra022580.1-P	Field mustard	cytosol	17.07	15.56
Bra022466.1-P	Field mustard	nucleus	28.05	14.2
Bra038240.1-P	Field mustard	nucleus	27.44	13.51
Bra022579.1-P	Field mustard	cytosol	9.15	11.36
Bra003830.1-P	Field mustard	nucleus, plastid	21.95	10.62
Bra027467.1-P	Field mustard	nucleus	25.61	10.24
Bra015967.1-P	Field mustard	nucleus	21.95	10.08
Bra016574.1-P	Field mustard	nucleus	21.95	10.06
Bra027282.1-P	Field mustard	nucleus	24.39	8.99
Bra039659.1-P	Field mustard	nucleus	25.0	8.91
Bra023101.1-P	Field mustard	nucleus	28.66	8.82
Bra001582.1-P	Field mustard	nucleus	23.17	8.7
Bra017205.1-P	Field mustard	nucleus	28.05	8.57
Bra006070.1-P	Field mustard	nucleus	25.61	8.48
Bra028293.1-P	Field mustard	nucleus	12.2	8.37
Bra024007.1-P	Field mustard	nucleus	23.78	8.35
Bra038109.1-P	Field mustard	nucleus	24.39	8.33
Bra009015.1-P	Field mustard	plastid	26.22	8.07
Bra033652.1-P	Field mustard	nucleus	28.05	7.48
Bra039842.1-P	Field mustard	nucleus	26.22	7.2
Bra014043.1-P	Field mustard	nucleus	24.39	6.94
Bra015221.1-P	Field mustard	nucleus	25.0	6.87
Bra009800.1-P	Field mustard	nucleus	15.24	6.1
Bra028576.1-P	Field mustard	cytosol	4.27	2.47
Bra036336.1-P	Field mustard	nucleus	4.88	1.59

Protein Annotations

EnsemblPlants:Bra019499.1	EnsemblPlants:Bra019499.1-P	EnsemblPlantsGene:Bra019499	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF112	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000253F0E1	UniProt:M4DSK6	MapMan:35.1

Description

AT3G47180 (E=5e-059) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA06:+:12868018..12868512

Molecular Weight (calculated)

19027.2 Da

IEP (calculated)

3.627

GRAVY (calculated)

-0.974

Length

164 amino acids

Sequence
(BLAST)

001: MESDGESEDE DEDEDEDEEG RNDNYYEYFD SNGFGEDEDE INEYLEDQES NSYVEEDDFL EEEDEIDPDQ LSYEELIALG EFIGVEKRGL TQIEISTCLK
101: PSSYVFSHNK NEIDRCVVCQ MEFEEGESLV VLRLCNHPYH SECITKWLQT KKVCPICGSE PSHG

Best Arabidopsis Sequence Match ( AT3G47180.1 )
(BLAST)

001: MDNQEEEPKQ PPNKLPDLAL FEQANSEVAL AASQANSHFA HAMHDSSPSM ISMIESDEES EDEEEINENY YEYFDSNGFG VDEDEINEFL EDQESNSNLE
101: EEDDFLEEED EIDPDQLSYE ELIALGDFIG VENRGLTPIE ISTCLNASTY VFSHNKNEID RCVVCQMEFE ERESLVVLRP CDHPYHSECI TKWLETKKIC
201: PICCSEPSVS

Arabidopsis Description

At3g47180 [Source:UniProtKB/TrEMBL;Acc:Q9SD55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.