Factsheet for Bra039842.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37230	Canola	nucleus	97.32	98.64
CDY62314	Canola	nucleus	93.97	94.76
Bra015221.1-P	Field mustard	nucleus	70.85	70.85
PGSC0003DMT400079217	Potato	cytosol	10.72	64.65
AT2G15530.4	Thale cress	nucleus	73.03	55.9
Zm00001d026446_P001	Maize	cytosol	13.23	42.93
VIT_03s0063g00160.t01	Wine grape	nucleus	41.71	33.92
Bra027467.1-P	Field mustard	nucleus	22.28	32.44
KRH50319	Soybean	nucleus	38.19	31.89
KRH70661	Soybean	mitochondrion, nucleus	37.52	30.73
Bra033652.1-P	Field mustard	nucleus	28.64	27.8
Solyc01g107940.2.1	Tomato	nucleus	31.83	26.87
PGSC0003DMT400066252	Potato	nucleus	31.83	26.57
Solyc01g107930.2.1	Tomato	nucleus	31.66	26.32
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	31.99	26.31
Bra019499.1-P	Field mustard	nucleus	7.2	26.22
GSMUA_Achr9P11290_001	Banana	nucleus	29.48	25.25
Bra024009.1-P	Field mustard	nucleus	7.37	25.14
GSMUA_Achr8P15680_001	Banana	nucleus	30.32	25.14
HORVU2Hr1G113970.2	Barley	cytosol, nucleus	23.95	24.74
Bra014043.1-P	Field mustard	nucleus	23.62	24.48
EES11547	Sorghum	nucleus	26.47	23.94
TraesCS2B01G542200.2	Wheat	nucleus	26.3	23.43
HORVU2Hr1G113930.2	Barley	nucleus	25.63	23.39
Zm00001d002080_P002	Maize	nucleus	25.96	23.38
TraesCS2D01G516000.1	Wheat	nucleus	25.8	23.02
TraesCS2A01G514400.3	Wheat	nucleus	25.63	22.87
Zm00001d026445_P001	Maize	nucleus	24.96	22.75
Os04t0648800-01	Rice	nucleus	25.29	22.64
EES10483	Sorghum	nucleus	26.3	22.56
Zm00001d004300_P003	Maize	nucleus	26.13	22.48
Zm00001d025027_P002	Maize	nucleus	25.96	22.27
Bra003830.1-P	Field mustard	nucleus, plastid	12.56	22.12
TraesCS2D01G022900.1	Wheat	nucleus	25.96	22.11
TraesCS2A01G022100.1	Wheat	nucleus	25.8	21.97
TraesCS2B01G030700.1	Wheat	nucleus	25.46	21.68
HORVU2Hr1G003340.5	Barley	nucleus	25.63	21.67
Os04t0185500-01	Rice	nucleus	24.96	21.02
Bra006070.1-P	Field mustard	nucleus	16.75	20.2
Bra015967.1-P	Field mustard	nucleus	11.89	19.89
Bra016574.1-P	Field mustard	nucleus	11.56	19.27
Bra023101.1-P	Field mustard	nucleus	16.58	18.57
Bra039659.1-P	Field mustard	nucleus	14.07	18.26
Bra040450.1-P	Field mustard	nucleus	7.37	18.18
Bra038109.1-P	Field mustard	nucleus	14.41	17.92
Bra036336.1-P	Field mustard	nucleus	15.08	17.89
Bra001582.1-P	Field mustard	nucleus	13.07	17.85
Bra009015.1-P	Field mustard	plastid	15.75	17.64
Bra022580.1-P	Field mustard	cytosol	5.03	16.67
Bra027282.1-P	Field mustard	nucleus	12.4	16.63
Bra009800.1-P	Field mustard	nucleus	11.39	16.59
Bra017205.1-P	Field mustard	nucleus	14.91	16.57
Bra022466.1-P	Field mustard	nucleus	8.88	16.36
Bra022579.1-P	Field mustard	cytosol	3.52	15.91
Bra024007.1-P	Field mustard	nucleus	12.23	15.63
Bra038240.1-P	Field mustard	nucleus	8.38	15.02
Bra028576.1-P	Field mustard	cytosol	5.36	11.31
Bra028293.1-P	Field mustard	nucleus	4.19	10.46

Protein Annotations

EnsemblPlants:Bra039842.1	EnsemblPlants:Bra039842.1-P	EnsemblPlantsGene:Bra039842	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF101	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000253EB1D	UniProt:M4FFG8	MapMan:35.1

Description

AT2G15530 (E=3e-150) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrScaffold000178:+:179075..181251

Molecular Weight (calculated)

64426.7 Da

IEP (calculated)

6.297

GRAVY (calculated)

-0.625

Length

597 amino acids

Sequence
(BLAST)

001: MNPMQGQQST GGGSSTDLNQ GDNEPVYNAE SSLNTMMSPV DNGPTYESPS SHNWWRLGES SSVSGPSDIK TNHQLQHGGV HAAGYNMRNG PAFLRGSSSN
101: AANMSMDMDS SDDDYGARPS GLVFRHSSYG SSLGSSVQAT GESSSGPAAS SLDGWGSSCK RKAFEAAAAP SPTLPDCSGL SHYGASSSLS LATPSQTSPN
201: RMEHMFGSGG GGRAVATNAF HSDTSSRPGR RLNLRHPQEY AGFSISHHSG GSMQQSLPLN SPQDMRSSSG ENQTNLVHLP ALARNIPQFA WDTSLSSRAS
301: TSSSGIGMPA ELFGPPRSNP EQPPMFAPPV HDQSIWSFTR GNPPSNIDAQ QMSPAWIPPP QSAPPPRASE LSPWSLFPSV ESQSTTSHGP AASLPLLPSV
401: SSNEAMPSSS SSSRSHRSRQ RRSGLLSERQ SELLHLRHLG RSLAADSDGR NHLISEIRQV LTAMRRGENL RIEDYMVFDP LIFQSMTEMH DRHREMRLDV
501: DNMSYEELLA LGERIGDVST GLREDVILKT MKQHKCTSSS AELHQDIEPC CICQEEYAEG DDLGTLECGH EFHKDCIKQW VMLKNLCPIC KTVALTT

Best Arabidopsis Sequence Match ( AT2G15530.5 )
(BLAST)

001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.