Factsheet for TraesCS2B01G542200.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G516000.1	Wheat	nucleus	92.39	92.53
TraesCS2A01G514400.3	Wheat	nucleus	91.34	91.48
HORVU2Hr1G113930.2	Barley	nucleus	88.21	90.37
HORVU2Hr1G113970.2	Barley	cytosol, nucleus	77.61	89.97
Os04t0648800-01	Rice	nucleus	72.84	73.16
EES11547	Sorghum	nucleus	70.15	71.21
Zm00001d002080_P002	Maize	nucleus	69.1	69.83
Zm00001d026445_P001	Maize	nucleus	67.76	69.31
PGSC0003DMT400079217	Potato	cytosol	9.7	65.66
Zm00001d026446_P001	Maize	cytosol	17.61	64.13
VIT_03s0063g00160.t01	Wine grape	nucleus	32.39	29.56
Bra015221.1-P	Field mustard	nucleus	24.93	27.97
CDY62314	Canola	nucleus	23.58	26.69
KRH50319	Soybean	nucleus	28.36	26.57
CDY37230	Canola	nucleus	23.28	26.49
AT4G34040.1	Thale cress	nucleus	26.27	26.43
Bra039842.1-P	Field mustard	nucleus	23.43	26.3
KRH70661	Soybean	mitochondrion, nucleus	27.76	25.51
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	27.31	25.21
PGSC0003DMT400066252	Potato	nucleus	26.42	24.76
Solyc01g107940.2.1	Tomato	nucleus	25.97	24.61
TraesCS2B01G030700.1	Wheat	nucleus	25.67	24.54
Solyc01g107930.2.1	Tomato	nucleus	26.27	24.51
TraesCS2B01G456100.1	Wheat	nucleus	13.58	24.4
TraesCS3B01G293600.1	Wheat	nucleus	12.24	23.91
AT2G15530.4	Thale cress	nucleus	27.46	23.59
TraesCS5B01G313800.1	Wheat	cytosol, nucleus, plastid	5.97	23.39
TraesCS5B01G279200.1	Wheat	cytosol	4.18	22.95
TraesCS1B01G393400.2	Wheat	nucleus	10.9	20.98
TraesCS4B01G191300.1	Wheat	nucleus	8.06	20.61
TraesCS3B01G272400.4	Wheat	nucleus	15.52	19.7
TraesCS6B01G149700.2	Wheat	nucleus	16.42	19.5
TraesCS2B01G418300.1	Wheat	cytosol	7.31	19.37
TraesCS1B01G129600.1	Wheat	nucleus	15.37	19.29
TraesCS3B01G120600.2	Wheat	cytosol	14.63	18.92
TraesCS7B01G170500.1	Wheat	cytosol, mitochondrion, nucleus	7.76	17.39
TraesCS1B01G426200.9	Wheat	cytosol	13.43	16.42
TraesCS5B01G325800.1	Wheat	mitochondrion	9.1	16.14
TraesCS7B01G328500.1	Wheat	nucleus	13.88	16.09

Protein Annotations

EnsemblPlants:TraesCS2B01G542200.2	EnsemblPlantsGene:TraesCS2B01G542200	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF464	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16481	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr2B:+:738681257..738686776

Molecular Weight (calculated)

73059.8 Da

IEP (calculated)

6.664

GRAVY (calculated)

-0.622

Length

670 amino acids

Sequence
(BLAST)

001: MQGQRNSVEQ LADVFGFDHG SGSGNPVMDQ QAYWNNMLGA ADSQNLQGYE MNRGDGAIPY RSEAHQDGQF LGFWGSGEAS SSGNALNYGS SNAIKAEHLN
101: IGGGLRIGER RLAAEHNLSL DNVDISLNNA SSHDLFGQSS NANSASQGKQ QHAGSSRADA TAQATELRLH PYRAFVLDDE QPEPFPSMNA FQNPLGNFPL
201: MPEDMDQRPG SSLDGRRLAC KRKNIEGVHG QFSAGASTSF SHRNDNAFHG IPSSSFNPAP GPNVSSHNFL LAPSSIEEQL SHYGAATGMP SSSYNHPSGG
301: NNNSGNSERS FRARTATAQQ VSPYGVWPSS GSIRQPGSWY HQAPAFQRAF DELEESMPVV SGINLQYQHP GNVVPGIPQT AHRFTGHGAS SSRAGSLDNI
401: ILGREEVTGR NLVAPSYPNA SAPLAAVDMR HLVPELSNWN SDNPGATIPG NVSSVSRANA SSTISRPAGS TSLAHQNLHR RHPRNLSEEI GRLSGALRGP
501: QHPRLRSGFL LERQGDGVWG VPLPMRNSRE GRRLMEIRNA LEMIQRGENV RFEQSIFYGG VEIHDRHRDM RLDIDNMSYE ELLALEERIG NVSTGLTEND
601: VMKLLKQRKF SSWRLSSMEC EPCCICQEEY VDGDDLGTLH CGHDFHASCI RQWLVVKNLC PICKNTALKT

Best Arabidopsis Sequence Match ( AT5G42940.1 )
(BLAST)

001: MQGERASLGY LSEALNFEHG SSSSNGVIDH WENIHSLGDN DLQDYMIANS ESNTSLANSV YHEQQGLRRF SLGEASSSGT KDEASSHNEQ RMETRCFDGR
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A

Arabidopsis Description

RHG1AProbable E3 ubiquitin-protein ligase RHG1A [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.