Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G271800.4 | Wheat | cytosol, mitochondrion, nucleus | 96.32 | 96.0 |
| TraesCS7A01G271500.1 | Wheat | cytosol, mitochondrion, nucleus | 88.96 | 92.36 |
| HORVU7Hr1G057310.5 | Barley | cytosol, nucleus, plastid | 86.62 | 86.62 |
| Os08t0548300-01 | Rice | nucleus | 66.56 | 65.25 |
| EES15239 | Sorghum | nucleus | 67.56 | 64.33 |
| OQU80744 | Sorghum | mitochondrion | 30.1 | 62.5 |
| Zm00001d053212_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 59.2 | 61.67 |
| TraesCS5B01G279200.1 | Wheat | cytosol | 23.75 | 58.2 |
| GSMUA_Achr4P05140_001 | Banana | nucleus | 51.84 | 52.36 |
| TraesCS5B01G325800.1 | Wheat | mitochondrion | 64.88 | 51.32 |
| GSMUA_Achr3P26700_001 | Banana | nucleus | 49.83 | 51.03 |
| GSMUA_Achr9P24150_001 | Banana | nucleus | 45.15 | 44.85 |
| VIT_10s0042g00580.t01 | Wine grape | nucleus | 46.15 | 44.81 |
| GSMUA_Achr4P04290_001 | Banana | nucleus | 31.77 | 42.79 |
| GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 42.47 | 41.37 |
| KRG90628 | Soybean | nucleus | 46.15 | 41.19 |
| CDY25357 | Canola | nucleus | 42.47 | 39.69 |
| KRH36126 | Soybean | cytosol, mitochondrion, nucleus | 46.82 | 39.44 |
| CDY24595 | Canola | nucleus | 41.47 | 39.37 |
| AT3G19910.1 | Thale cress | nucleus | 44.48 | 39.12 |
| Bra022466.1-P | Field mustard | nucleus | 41.81 | 38.58 |
| CDY33429 | Canola | nucleus | 42.47 | 38.48 |
| CDY42218 | Canola | nucleus | 42.47 | 38.02 |
| Bra038240.1-P | Field mustard | nucleus | 42.14 | 37.84 |
| TraesCS5B01G313800.1 | Wheat | cytosol, nucleus, plastid | 18.06 | 31.58 |
| TraesCS4B01G191300.1 | Wheat | nucleus | 25.42 | 29.01 |
| TraesCS2B01G418300.1 | Wheat | cytosol | 22.74 | 26.88 |
| TraesCS3B01G293600.1 | Wheat | nucleus | 16.72 | 14.58 |
| TraesCS1B01G393400.2 | Wheat | nucleus | 14.72 | 12.64 |
| TraesCS2B01G456100.1 | Wheat | nucleus | 15.72 | 12.6 |
| TraesCS3B01G120600.2 | Wheat | cytosol | 16.39 | 9.46 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 17.39 | 9.22 |
| TraesCS1B01G129600.1 | Wheat | nucleus | 16.05 | 8.99 |
| TraesCS7B01G328500.1 | Wheat | nucleus | 17.06 | 8.82 |
| TraesCS1B01G426200.9 | Wheat | cytosol | 16.05 | 8.76 |
| TraesCS3B01G272400.4 | Wheat | nucleus | 15.38 | 8.71 |
| TraesCS2B01G542200.2 | Wheat | nucleus | 17.39 | 7.76 |
| TraesCS2B01G030700.1 | Wheat | nucleus | 16.05 | 6.85 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G170500.1 | EnsemblPlantsGene:TraesCS7B01G170500 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF166 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SUPFAM:SSF57850 | TIGR:cd16454 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7B:-:242676121..242678604
Molecular Weight (calculated)
32881.7 Da
IEP (calculated)
3.683
GRAVY (calculated)
-0.795
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGPKGNGGE KPSADQNHSP NTPAAAGAGG DDVSAAVGRR PFTALSQEEA DLALARVLQE QERAYMMLSA HGGDDSEYDA SDAGSYEYYD EEEEGIEGDE
101: GSDYEEEGNE DEEVGDAEGP ELDPARYEDD EAYARALQDA EEREVAQRLM ALAGITDLGE EMEHDVEDGE DEEDGDSAQD AWEDVDPDEY SYEELVALGE
201: VVGTESRGVS ANTLASLPSV TYQAEDNQDS NMEQCVICRV EFEEGESLVA LPCKHSYHSD CINQWLQLNK PLPCCRYALC AVQKFLPRVT TRHDILLWW
101: GSDYEEEGNE DEEVGDAEGP ELDPARYEDD EAYARALQDA EEREVAQRLM ALAGITDLGE EMEHDVEDGE DEEDGDSAQD AWEDVDPDEY SYEELVALGE
201: VVGTESRGVS ANTLASLPSV TYQAEDNQDS NMEQCVICRV EFEEGESLVA LPCKHSYHSD CINQWLQLNK PLPCCRYALC AVQKFLPRVT TRHDILLWW
001: MPMENDNGPH VGNVVVTAEQ ATKINETDGR LPENRQTGVV SDTGSGSERG EQGVGESAVA VAVPVEESGS ISVGELPAPR SSSARVPFTN LSQIDADLAL
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS
Arabidopsis Description
BBRE3 ubiquitin ligase BIG BROTHER-related [Source:UniProtKB/Swiss-Prot;Acc:Q9LT17]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.