Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G170500.1 | Wheat | cytosol, mitochondrion, nucleus | 96.0 | 96.32 |
| TraesCS7A01G271500.1 | Wheat | cytosol, mitochondrion, nucleus | 88.0 | 91.67 |
| HORVU7Hr1G057310.5 | Barley | cytosol, nucleus, plastid | 87.67 | 87.96 |
| EES15239 | Sorghum | nucleus | 69.0 | 65.92 |
| Os08t0548300-01 | Rice | nucleus | 66.67 | 65.57 |
| TraesCS5D01G286700.1 | Wheat | nucleus | 25.0 | 63.56 |
| Zm00001d053212_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 60.67 | 63.41 |
| OQU80744 | Sorghum | mitochondrion | 29.67 | 61.81 |
| TraesCS5D01G331600.1 | Wheat | cytosol, mitochondrion, nucleus | 65.33 | 57.65 |
| GSMUA_Achr4P05140_001 | Banana | nucleus | 52.33 | 53.04 |
| GSMUA_Achr3P26700_001 | Banana | nucleus | 50.67 | 52.05 |
| GSMUA_Achr9P24150_001 | Banana | nucleus | 45.0 | 44.85 |
| VIT_10s0042g00580.t01 | Wine grape | nucleus | 46.0 | 44.81 |
| GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 44.0 | 43.0 |
| GSMUA_Achr4P04290_001 | Banana | nucleus | 30.67 | 41.44 |
| KRG90628 | Soybean | nucleus | 46.0 | 41.19 |
| CDY25357 | Canola | nucleus | 43.0 | 40.31 |
| AT3G19910.1 | Thale cress | nucleus | 45.0 | 39.71 |
| CDY24595 | Canola | nucleus | 41.67 | 39.68 |
| Bra022466.1-P | Field mustard | nucleus | 42.67 | 39.51 |
| CDY42218 | Canola | nucleus | 43.33 | 38.92 |
| KRH36126 | Soybean | cytosol, mitochondrion, nucleus | 46.0 | 38.87 |
| CDY33429 | Canola | nucleus | 42.67 | 38.79 |
| Bra038240.1-P | Field mustard | nucleus | 43.0 | 38.74 |
| TraesCS5D01G319600.1 | Wheat | cytosol, nucleus, plastid | 17.67 | 30.99 |
| TraesCS4D01G192500.2 | Wheat | cytosol, nucleus, vacuole | 25.0 | 27.78 |
| TraesCS2D01G397800.1 | Wheat | cytosol | 22.0 | 25.68 |
| TraesCS7D01G049800.1 | Wheat | nucleus | 18.67 | 22.31 |
| TraesCS3D01G260700.1 | Wheat | nucleus | 13.67 | 20.5 |
| TraesCS1D01G380000.2 | Wheat | nucleus | 14.67 | 12.72 |
| TraesCS2D01G432800.1 | Wheat | nucleus | 15.0 | 12.1 |
| TraesCS3D01G105300.1 | Wheat | cytosol | 17.33 | 10.04 |
| TraesCS1D01G405800.9 | Wheat | cytosol | 15.67 | 8.97 |
| TraesCS1D01G111500.1 | Wheat | nucleus | 16.0 | 8.96 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 17.33 | 8.62 |
| TraesCS3D01G244600.1 | Wheat | nucleus | 15.0 | 8.52 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 15.67 | 8.2 |
| TraesCS2D01G516000.1 | Wheat | nucleus | 16.33 | 7.32 |
| TraesCS2D01G022900.1 | Wheat | nucleus | 16.33 | 6.99 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G271800.4 | EnsemblPlantsGene:TraesCS7D01G271800 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF172 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SUPFAM:SSF57850 | TIGR:cd16454 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7D:+:261865255..261867667
Molecular Weight (calculated)
32705.6 Da
IEP (calculated)
3.700
GRAVY (calculated)
-0.711
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGPKGNGGE KHSADQNHSP NTPAAAGAGG DDVSAAAAAA VGRRPFTALS QEEADLALAR VLQEQERAYM MLSAHGGDGS EYDASDAGSY DYYDEEEEGI
101: EGDEGSDYEE EGDEDEEVGE AEGPELDPAR YEDDEAYARA LQDAEEREVA QRLMALAGIT DLGEEMEHDV EDEEDGDSAQ DAWEDVDPDE YSYEELVALG
201: EVVGTESRGV SANTLASLPL VTYQAEDNQD SNMEQCVICR VEFEEGESLV ALPCKHSYHS DCINQWLQLN KPLPCCRYAL CAVQKFLPRV TTSHDILLWS
101: EGDEGSDYEE EGDEDEEVGE AEGPELDPAR YEDDEAYARA LQDAEEREVA QRLMALAGIT DLGEEMEHDV EDEEDGDSAQ DAWEDVDPDE YSYEELVALG
201: EVVGTESRGV SANTLASLPL VTYQAEDNQD SNMEQCVICR VEFEEGESLV ALPCKHSYHS DCINQWLQLN KPLPCCRYAL CAVQKFLPRV TTSHDILLWS
001: MPMENDNGPH VGNVVVTAEQ ATKINETDGR LPENRQTGVV SDTGSGSERG EQGVGESAVA VAVPVEESGS ISVGELPAPR SSSARVPFTN LSQIDADLAL
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQVKMHLPEG N
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQVKMHLPEG N
Arabidopsis Description
BBRE3 ubiquitin ligase BIG BROTHER-related [Source:UniProtKB/Swiss-Prot;Acc:Q9LT17]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.