Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G082790.2 | Barley | nucleus | 92.06 | 90.46 |
| TraesCS5B01G325800.1 | Wheat | mitochondrion | 96.76 | 87.04 |
| TraesCS5D01G286700.1 | Wheat | nucleus | 28.53 | 82.2 |
| Os09t0535100-01 | Rice | nucleus | 74.41 | 77.85 |
| EER97094 | Sorghum | nucleus | 72.94 | 76.54 |
| Zm00001d021314_P005 | Maize | cytosol, mitochondrion, nucleus | 68.53 | 72.36 |
| Zm00001d006226_P001 | Maize | peroxisome | 67.35 | 72.01 |
| TraesCS7D01G271800.4 | Wheat | cytosol, mitochondrion, nucleus | 57.65 | 65.33 |
| GSMUA_Achr4P05140_001 | Banana | nucleus | 52.35 | 60.14 |
| GSMUA_Achr3P26700_001 | Banana | nucleus | 50.29 | 58.56 |
| VIT_10s0042g00580.t01 | Wine grape | nucleus | 45.88 | 50.65 |
| GSMUA_Achr9P24150_001 | Banana | nucleus | 42.65 | 48.17 |
| GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 43.24 | 47.88 |
| AT3G19910.1 | Thale cress | nucleus | 46.76 | 46.76 |
| CDY25357 | Canola | nucleus | 43.82 | 46.56 |
| CDY24595 | Canola | nucleus | 42.94 | 46.35 |
| KRG90628 | Soybean | nucleus | 45.59 | 46.27 |
| Bra022466.1-P | Field mustard | nucleus | 43.53 | 45.68 |
| CDY42218 | Canola | nucleus | 44.71 | 45.51 |
| Bra038240.1-P | Field mustard | nucleus | 44.12 | 45.05 |
| GSMUA_Achr4P04290_001 | Banana | nucleus | 29.41 | 45.05 |
| CDY33429 | Canola | nucleus | 43.53 | 44.85 |
| KRH36126 | Soybean | cytosol, mitochondrion, nucleus | 43.82 | 41.97 |
| TraesCS5D01G319600.1 | Wheat | cytosol, nucleus, plastid | 17.35 | 34.5 |
| TraesCS2D01G397800.1 | Wheat | cytosol | 22.35 | 29.57 |
| TraesCS4D01G192500.2 | Wheat | cytosol, nucleus, vacuole | 23.24 | 29.26 |
| TraesCS7D01G049800.1 | Wheat | nucleus | 17.94 | 24.3 |
| TraesCS3D01G260700.1 | Wheat | nucleus | 12.94 | 22.0 |
| TraesCS1D01G380000.2 | Wheat | nucleus | 15.29 | 15.03 |
| TraesCS2D01G432800.1 | Wheat | nucleus | 14.12 | 12.9 |
| TraesCS3D01G105300.1 | Wheat | cytosol | 17.06 | 11.2 |
| TraesCS3D01G244600.1 | Wheat | nucleus | 15.29 | 9.85 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 17.06 | 9.62 |
| TraesCS1D01G111500.1 | Wheat | nucleus | 15.0 | 9.51 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 15.88 | 9.42 |
| TraesCS2D01G516000.1 | Wheat | nucleus | 17.35 | 8.82 |
| TraesCS1D01G405800.9 | Wheat | cytosol | 13.53 | 8.78 |
| TraesCS2D01G022900.1 | Wheat | nucleus | 17.65 | 8.56 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G331600.1 | EnsemblPlantsGene:TraesCS5D01G331600 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF172 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16454 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr5D:+:422697010..422702597
Molecular Weight (calculated)
36468.5 Da
IEP (calculated)
3.715
GRAVY (calculated)
-0.786
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSKGSDGG GERPGADHNP IPDQPPPLAA PGGGRDAAAA AAAAAAAAAA LAEDEARRPF TALSQVDADL ALARVLQEQE RAYMMLRMNG VGGGGGEGSD
101: YGSSEAGSYE YDEDAEEDYE EELENHLRVH HHEHPGGGEG DGDDDLEADG EGKGEGEGDG SEESEYEEEG FDEDEEVEDV DLDPAEYEDD EAYARALQDA
201: EEREVAARLM ALAGISDWRA VEHVEDQIND AQDSWQEVDP DEYSYEELVA LGEVVGTESR GLSADTLASL PSVTYKTKDM QDGNTEQCVI CRVEFEEGES
301: LVALPCNHSY HPDCINQWLQ INKVCPMCSA EVSTSASKQA
101: YGSSEAGSYE YDEDAEEDYE EELENHLRVH HHEHPGGGEG DGDDDLEADG EGKGEGEGDG SEESEYEEEG FDEDEEVEDV DLDPAEYEDD EAYARALQDA
201: EEREVAARLM ALAGISDWRA VEHVEDQIND AQDSWQEVDP DEYSYEELVA LGEVVGTESR GLSADTLASL PSVTYKTKDM QDGNTEQCVI CRVEFEEGES
301: LVALPCNHSY HPDCINQWLQ INKVCPMCSA EVSTSASKQA
001: MPMENDNGPH VGNVVVTAEQ ATKINETDGR LPENRQTGVV SDTGSGSERG EQGVGESAVA VAVPVEESGS ISVGELPAPR SSSARVPFTN LSQIDADLAL
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS
Arabidopsis Description
BBRE3 ubiquitin ligase BIG BROTHER-related [Source:UniProtKB/Swiss-Prot;Acc:Q9LT17]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.