Factsheet for Bra022466.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25357	Canola	nucleus	96.6	97.81
CDY24595	Canola	nucleus	93.52	96.19
Bra038240.1-P	Field mustard	nucleus	86.11	83.78
AT3G19910.1	Thale cress	nucleus	83.64	79.71
VIT_10s0042g00580.t01	Wine grape	nucleus	50.0	52.6
TraesCS5D01G286700.1	Wheat	nucleus	18.83	51.69
GSMUA_Achr4P05140_001	Banana	nucleus	46.91	51.35
OQU80744	Sorghum	mitochondrion	21.91	49.31
KRG90628	Soybean	nucleus	50.62	48.96
GSMUA_Achr3P26700_001	Banana	nucleus	43.52	48.29
TraesCS5B01G279200.1	Wheat	cytosol	17.9	47.54
TraesCS7A01G271500.1	Wheat	cytosol, mitochondrion, nucleus	41.67	46.88
EES15239	Sorghum	nucleus	44.14	45.54
EER97094	Sorghum	nucleus	44.44	44.44
Os08t0548300-01	Rice	nucleus	41.67	44.26
Os09t0535100-01	Rice	nucleus	44.14	44.0
TraesCS5D01G331600.1	Wheat	cytosol, mitochondrion, nucleus	45.68	43.53
KRH36126	Soybean	cytosol, mitochondrion, nucleus	47.53	43.38
Zm00001d053212_P002	Maize	cytosol, mitochondrion, nucleus, plastid	38.27	43.21
HORVU7Hr1G057310.5	Barley	cytosol, nucleus, plastid	39.51	42.81
TraesCS7D01G271800.4	Wheat	cytosol, mitochondrion, nucleus	39.51	42.67
HORVU5Hr1G082790.2	Barley	nucleus	45.37	42.49
TraesCS7B01G170500.1	Wheat	cytosol, mitochondrion, nucleus	38.58	41.81
Zm00001d006226_P001	Maize	peroxisome	40.43	41.2
Zm00001d021314_P005	Maize	cytosol, mitochondrion, nucleus	40.74	40.99
GSMUA_Achr9P24150_001	Banana	nucleus	37.04	39.87
GSMUA_Achr4P04180_001	Banana	mitochondrion, nucleus, peroxisome, plastid	37.65	39.74
TraesCS5B01G325800.1	Wheat	mitochondrion	46.3	39.68
TraesCS5A01G325400.2	Wheat	nucleus	44.14	38.65
GSMUA_Achr4P04290_001	Banana	nucleus	25.31	36.94
Bra040450.1-P	Field mustard	nucleus	21.6	28.93
Bra019499.1-P	Field mustard	nucleus	14.2	28.05
Bra024009.1-P	Field mustard	nucleus	10.8	20.0
Bra022579.1-P	Field mustard	cytosol	8.02	19.7
Bra022580.1-P	Field mustard	cytosol	10.49	18.89
Bra028293.1-P	Field mustard	nucleus	12.65	17.15
Bra003830.1-P	Field mustard	nucleus, plastid	12.65	12.09
Bra015967.1-P	Field mustard	nucleus	12.65	11.48
Bra027467.1-P	Field mustard	nucleus	14.51	11.46
Bra023101.1-P	Field mustard	nucleus	17.28	10.51
Bra016574.1-P	Field mustard	nucleus	11.42	10.34
Bra006070.1-P	Field mustard	nucleus	15.74	10.3
Bra001582.1-P	Field mustard	nucleus	13.89	10.3
Bra024007.1-P	Field mustard	nucleus	14.81	10.28
Bra027282.1-P	Field mustard	nucleus	13.27	9.66
Bra009015.1-P	Field mustard	plastid	15.74	9.57
Bra039659.1-P	Field mustard	nucleus	13.58	9.57
Bra038109.1-P	Field mustard	nucleus	13.89	9.38
Bra017205.1-P	Field mustard	nucleus	15.12	9.12
Bra015221.1-P	Field mustard	nucleus	16.67	9.05
Bra039842.1-P	Field mustard	nucleus	16.36	8.88
Bra033652.1-P	Field mustard	nucleus	16.67	8.78
Bra009800.1-P	Field mustard	nucleus	9.88	7.8
Bra014043.1-P	Field mustard	nucleus	12.96	7.29
Bra028576.1-P	Field mustard	cytosol	4.63	5.3
Bra036336.1-P	Field mustard	nucleus	8.02	5.17

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra022466	EnsemblPlants:Bra022466.1	EnsemblPlants:Bra022466.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0008270	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR011016	InterPro:IPR013083
UniProt:M4E118	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF166	SMART:SM00184
SMART:SM00744	SUPFAM:SSF57850	UniParc:UPI0002547CC2	InterPro:Znf_RING	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

AT3G19910 (E=4e-113) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA05:-:17498342..17500835

Molecular Weight (calculated)

35565.5 Da

IEP (calculated)

3.657

GRAVY (calculated)

-0.858

Length

324 amino acids

Sequence
(BLAST)

001: MPMENDNDHA AKVVLTVEQA SKVSDTAVRL PENLPTGVVS ESGGGSEKGE EAVETAVAED VDESGSNTEG ELPPRSSSAR VPFTNLSQID ADLALARTLQ
101: EQERAYMMLT MNSEVSDYGS WETGSYVYEE DEDDDEDEYE TDDDPQGDAP NVNAHEDDQE DEGRNADEEE VGYSDDEAFA RAIQEAEERE MADRLSALTG
201: LANRVEDLEE DDHTSQDAWD EMDPDELSYE ELLALGDIVG TESRGLSADT IASLPSKRYK DGDNQNGTNE SCVICRLDYE DDDDLILLPC KHSYHSECIN
301: NWLKINKSCP VCSAEVSTST AGQS

Best Arabidopsis Sequence Match ( AT3G19910.1 )
(BLAST)

001: MPMENDNGPH VGNVVVTAEQ ATKINETDGR LPENRQTGVV SDTGSGSERG EQGVGESAVA VAVPVEESGS ISVGELPAPR SSSARVPFTN LSQIDADLAL
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS

Arabidopsis Description

BBRE3 ubiquitin ligase BIG BROTHER-related [Source:UniProtKB/Swiss-Prot;Acc:Q9LT17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.