Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25357 | Canola | nucleus | 79.71 | 84.69 |
| Bra022466.1-P | Field mustard | nucleus | 79.71 | 83.64 |
| CDY24595 | Canola | nucleus | 77.35 | 83.49 |
| CDY33429 | Canola | nucleus | 79.71 | 82.12 |
| CDY42218 | Canola | nucleus | 80.0 | 81.44 |
| Bra038240.1-P | Field mustard | nucleus | 79.71 | 81.38 |
| VIT_10s0042g00580.t01 | Wine grape | nucleus | 49.12 | 54.22 |
| TraesCS5D01G286700.1 | Wheat | nucleus | 18.24 | 52.54 |
| GSMUA_Achr4P05140_001 | Banana | nucleus | 45.59 | 52.36 |
| KRG90628 | Soybean | nucleus | 51.47 | 52.24 |
| OQU80744 | Sorghum | mitochondrion | 21.18 | 50.0 |
| GSMUA_Achr3P26700_001 | Banana | nucleus | 42.65 | 49.66 |
| TraesCS7A01G271500.1 | Wheat | cytosol, mitochondrion, nucleus | 41.76 | 49.31 |
| TraesCS5B01G279200.1 | Wheat | cytosol | 17.65 | 49.18 |
| EES15239 | Sorghum | nucleus | 43.53 | 47.13 |
| TraesCS5D01G331600.1 | Wheat | cytosol, mitochondrion, nucleus | 46.76 | 46.76 |
| Os09t0535100-01 | Rice | nucleus | 44.41 | 46.46 |
| EER97094 | Sorghum | nucleus | 44.12 | 46.3 |
| KRH36126 | Soybean | cytosol, mitochondrion, nucleus | 48.24 | 46.2 |
| HORVU7Hr1G057310.5 | Barley | cytosol, nucleus, plastid | 40.0 | 45.48 |
| HORVU5Hr1G082790.2 | Barley | nucleus | 45.88 | 45.09 |
| TraesCS7D01G271800.4 | Wheat | cytosol, mitochondrion, nucleus | 39.71 | 45.0 |
| Os08t0548300-01 | Rice | nucleus | 40.29 | 44.92 |
| Zm00001d053212_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 37.65 | 44.6 |
| TraesCS7B01G170500.1 | Wheat | cytosol, mitochondrion, nucleus | 39.12 | 44.48 |
| Zm00001d021314_P005 | Maize | cytosol, mitochondrion, nucleus | 40.59 | 42.86 |
| Zm00001d006226_P001 | Maize | peroxisome | 40.0 | 42.77 |
| TraesCS5B01G325800.1 | Wheat | mitochondrion | 47.35 | 42.59 |
| GSMUA_Achr9P24150_001 | Banana | nucleus | 36.76 | 41.53 |
| TraesCS5A01G325400.2 | Wheat | nucleus | 44.71 | 41.08 |
| GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 36.47 | 40.39 |
| GSMUA_Achr4P04290_001 | Banana | nucleus | 25.29 | 38.74 |
| AT3G63530.2 | Thale cress | cytosol | 21.18 | 29.03 |
| AT5G52150.1 | Thale cress | cytosol, nucleus, peroxisome | 16.47 | 28.0 |
| AT3G47180.1 | Thale cress | cytosol | 16.76 | 27.14 |
| AT5G52140.1 | Thale cress | nucleus | 18.24 | 22.14 |
| AT5G52155.1 | Thale cress | nucleus | 10.29 | 19.23 |
| AT4G00070.1 | Thale cress | nucleus | 9.71 | 18.44 |
| AT1G36950.1 | Thale cress | cytosol | 8.53 | 12.83 |
| AT1G17970.1 | Thale cress | nucleus | 11.47 | 10.6 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 11.18 | 10.35 |
| AT5G10650.2 | Thale cress | nucleus | 15.88 | 10.29 |
| AT5G24870.2 | Thale cress | nucleus | 15.59 | 10.19 |
| AT1G53190.1 | Thale cress | nucleus | 14.12 | 9.72 |
| AT3G15070.1 | Thale cress | nucleus | 13.53 | 9.47 |
| AT4G31450.2 | Thale cress | nucleus | 12.65 | 8.65 |
| AT5G42940.1 | Thale cress | nucleus | 17.35 | 8.54 |
| AT1G45180.3 | Thale cress | nucleus | 15.29 | 8.06 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 13.82 | 7.85 |
| AT4G34040.1 | Thale cress | nucleus | 14.12 | 7.21 |
| AT2G15530.4 | Thale cress | nucleus | 15.59 | 6.79 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:821529 | UniProt:A0A178VK20 | ProteinID:AEE76307.1 | ArrayExpress:AT3G19910 |
| EnsemblPlantsGene:AT3G19910 | RefSeq:AT3G19910 | TAIR:AT3G19910 | RefSeq:AT3G19910-TAIR-G | EnsemblPlants:AT3G19910.1 | TAIR:AT3G19910.1 |
| EMBL:AY045590 | EMBL:AY045984 | EMBL:AY079353 | EMBL:AY084453 | Unigene:At.19776 | ProteinID:BAB01306.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0043161 | GO:GO:0046872 | GO:GO:0051865 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 |
| RefSeq:NP_566651.1 | ProteinID:OAP06196.1 | PFAM:PF13639 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF166 | UniProt:Q9LT17 | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI00000A043F | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
BBRE3 ubiquitin ligase BIG BROTHER-related [Source:UniProtKB/Swiss-Prot;Acc:Q9LT17]
Coordinates
chr3:+:6926189..6929567
Molecular Weight (calculated)
37264.5 Da
IEP (calculated)
3.624
GRAVY (calculated)
-0.797
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MPMENDNGPH VGNVVVTAEQ ATKINETDGR LPENRQTGVV SDTGSGSERG EQGVGESAVA VAVPVEESGS ISVGELPAPR SSSARVPFTN LSQIDADLAL
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.