Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97032 | Canola | plastid | 51.24 | 80.3 |
| CDY71882 | Canola | plastid | 52.95 | 79.43 |
| CDX95473 | Canola | nucleus | 67.62 | 76.51 |
| Bra006070.1-P | Field mustard | nucleus | 71.24 | 75.56 |
| CDX78393 | Canola | nucleus | 71.05 | 75.51 |
| CDX85750 | Canola | nucleus | 55.24 | 75.13 |
| CDX97044 | Canola | nucleus | 72.19 | 74.31 |
| CDX70363 | Canola | nucleus | 68.38 | 73.87 |
| Bra009015.1-P | Field mustard | plastid | 73.71 | 72.61 |
| CDX69813 | Canola | mitochondrion | 73.14 | 72.05 |
| CDY40109 | Canola | nucleus | 22.29 | 62.9 |
| AT5G24870.2 | Thale cress | nucleus | 58.1 | 58.65 |
| Zm00001d013776_P001 | Maize | cytosol | 12.76 | 51.94 |
| Zm00001d015453_P001 | Maize | cytosol | 12.76 | 51.94 |
| Zm00001d019616_P001 | Maize | cytosol | 12.76 | 51.94 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 8.95 | 51.09 |
| GSMUA_AchrUn_... | Banana | nucleus | 19.24 | 44.89 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 45.33 | 43.27 |
| KRH04957 | Soybean | nucleus | 41.33 | 40.79 |
| KRH52597 | Soybean | nucleus | 40.95 | 39.74 |
| PGSC0003DMT400067670 | Potato | nucleus | 39.05 | 38.83 |
| Solyc08g006460.2.1 | Tomato | nucleus | 38.48 | 38.04 |
| KRH16134 | Soybean | nucleus | 39.62 | 37.48 |
| PGSC0003DMT400075959 | Potato | nucleus | 37.71 | 36.33 |
| Solyc12g096420.1.1 | Tomato | nucleus | 37.9 | 36.12 |
| KRH61936 | Soybean | nucleus | 36.57 | 34.47 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 28.0 | 28.6 |
| Os06t0695600-01 | Rice | nucleus | 31.24 | 28.32 |
| KXG20741 | Sorghum | nucleus | 31.81 | 28.31 |
| TraesCS7B01G328500.1 | Wheat | nucleus | 30.48 | 27.68 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 30.86 | 27.65 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 29.52 | 27.48 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 30.48 | 27.44 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 29.71 | 27.23 |
| Zm00001d014609_P002 | Maize | nucleus | 30.29 | 27.18 |
| Os08t0241400-00 | Rice | nucleus | 19.05 | 26.53 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 30.29 | 26.37 |
| Zm00001d015289_P001 | Maize | nucleus | 28.19 | 26.15 |
| TraesCS2B01G456100.1 | Wheat | nucleus | 18.48 | 26.01 |
| HORVU2Hr1G101370.5 | Barley | nucleus | 18.48 | 25.87 |
| Zm00001d024406_P002 | Maize | nucleus | 17.52 | 25.7 |
| OQU80147 | Sorghum | nucleus | 17.52 | 25.7 |
| EES12797 | Sorghum | nucleus | 18.29 | 25.67 |
| TraesCS2A01G437200.1 | Wheat | nucleus | 17.9 | 25.47 |
| TraesCS2D01G432800.1 | Wheat | nucleus | 17.9 | 25.27 |
| Os02t0150700-01 | Rice | extracellular | 30.1 | 24.65 |
| EES04530 | Sorghum | nucleus | 24.19 | 24.52 |
| TraesCS7A01G428300.2 | Wheat | nucleus | 27.05 | 24.44 |
| Os04t0603200-01 | Rice | nucleus | 15.24 | 24.32 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 16.38 | 23.43 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 17.71 | 23.43 |
| Zm00001d026248_P001 | Maize | nucleus | 16.95 | 23.42 |
| AT3G63530.2 | Thale cress | cytosol | 10.67 | 22.58 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 29.71 | 22.45 |
| AT3G47180.1 | Thale cress | cytosol | 8.95 | 22.38 |
| AT4G00070.1 | Thale cress | nucleus | 7.43 | 21.79 |
| AT1G17970.1 | Thale cress | nucleus | 14.86 | 21.2 |
| AT4G31450.2 | Thale cress | nucleus | 19.62 | 20.72 |
| AT5G52140.1 | Thale cress | nucleus | 9.33 | 17.5 |
| AT5G52150.1 | Thale cress | cytosol, nucleus, peroxisome | 6.48 | 17.0 |
| AT1G53190.1 | Thale cress | nucleus | 15.81 | 16.8 |
| AT5G52155.1 | Thale cress | nucleus | 5.71 | 16.48 |
| AT3G15070.1 | Thale cress | nucleus | 15.24 | 16.46 |
| AT3G19910.1 | Thale cress | nucleus | 10.29 | 15.88 |
| AT4G34040.1 | Thale cress | nucleus | 19.62 | 15.47 |
| AT1G36950.1 | Thale cress | cytosol | 6.48 | 15.04 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 16.38 | 14.36 |
| AT1G45180.3 | Thale cress | nucleus | 16.76 | 13.64 |
| AT5G42940.1 | Thale cress | nucleus | 17.14 | 13.02 |
| AT2G15530.4 | Thale cress | nucleus | 18.67 | 12.56 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:830929 | ProteinID:AED91576.1 | ProteinID:AED91577.1 | ArrayExpress:AT5G10650 |
| EnsemblPlantsGene:AT5G10650 | RefSeq:AT5G10650 | TAIR:AT5G10650 | RefSeq:AT5G10650-TAIR-G | EnsemblPlants:AT5G10650.2 | TAIR:AT5G10650.2 |
| EMBL:BT015918 | EMBL:BT020582 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_001031869.1 | RefSeq:NP_196626.2 |
| PFAM:PF13639 | PO:PO:0000013 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50089 |
| PANTHER:PTHR22937 | PANTHER:PTHR22937:SF53 | UniProt:Q5XEP8 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0000162487 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
At5g10650 [Source:UniProtKB/TrEMBL;Acc:Q5XEP8]
Coordinates
chr5:-:3364972..3368082
Molecular Weight (calculated)
57073.8 Da
IEP (calculated)
8.909
GRAVY (calculated)
-0.648
Length
525 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGCAGKRSV DRLVVPRKAS GLTLRENMNK TDGKNVPFCS RVGCTAKVTS TKRSRIGSTD NNTKVGLPPV PSTLNRKEIV GSSSRTPGGF GYLRKPAKVT
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.