Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G52155.1 | Thale cress | nucleus | 24.0 | 26.37 |
| AT5G52140.1 | Thale cress | nucleus | 34.0 | 24.29 |
| Solyc03g026150.2.1 | Tomato | nucleus | 28.5 | 24.05 |
| PGSC0003DMT400037132 | Potato | nucleus | 28.0 | 23.43 |
| TraesCS2B01G418300.1 | Wheat | cytosol | 26.5 | 20.95 |
| TraesCS2A01G400200.1 | Wheat | nucleus | 26.0 | 20.55 |
| EES11283 | Sorghum | nucleus | 25.0 | 20.24 |
| TraesCS2D01G397800.1 | Wheat | cytosol | 25.5 | 19.84 |
| AT3G63530.2 | Thale cress | cytosol | 24.5 | 19.76 |
| Os04t0571200-01 | Rice | nucleus | 25.0 | 19.68 |
| HORVU2Hr1G094980.4 | Barley | cytosol | 26.0 | 19.62 |
| VIT_12s0028g01220.t01 | Wine grape | nucleus | 20.0 | 18.26 |
| AT3G19910.1 | Thale cress | nucleus | 28.0 | 16.47 |
| AT3G47180.1 | Thale cress | cytosol | 16.0 | 15.24 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 25.5 | 15.04 |
| Zm00001d002624_P003 | Maize | cytosol | 24.5 | 14.58 |
| AT4G00070.1 | Thale cress | nucleus | 11.5 | 12.85 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 16.5 | 8.99 |
| AT1G17970.1 | Thale cress | nucleus | 14.0 | 7.61 |
| AT1G36950.1 | Thale cress | cytosol | 7.5 | 6.64 |
| AT5G24870.2 | Thale cress | nucleus | 17.0 | 6.54 |
| AT1G53190.1 | Thale cress | nucleus | 16.0 | 6.48 |
| AT5G10650.2 | Thale cress | nucleus | 17.0 | 6.48 |
| AT3G15070.1 | Thale cress | nucleus | 14.5 | 5.97 |
| AT4G31450.2 | Thale cress | nucleus | 14.0 | 5.63 |
| AT5G42940.1 | Thale cress | nucleus | 18.5 | 5.35 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 15.5 | 5.18 |
| AT1G45180.3 | Thale cress | nucleus | 16.5 | 5.12 |
| AT4G34040.1 | Thale cress | nucleus | 16.0 | 4.8 |
| AT2G15530.4 | Thale cress | nucleus | 17.0 | 4.36 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:835291 | ProteinID:AED96177.1 | ArrayExpress:AT5G52150 | EnsemblPlantsGene:AT5G52150 |
| RefSeq:AT5G52150 | TAIR:AT5G52150 | RefSeq:AT5G52150-TAIR-G | EnsemblPlants:AT5G52150.1 | TAIR:AT5G52150.1 | Unigene:At.55499 |
| ProteinID:BAA97458.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 |
| GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_200028.1 | PFAM:PF17123 | PFscan:PS50089 |
| PANTHER:PTHR14155 | PANTHER:PTHR14155:SF438 | UniProt:Q9LTK5 | SUPFAM:SSF57850 | UniParc:UPI00000A457F | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LTK5]
Coordinates
chr5:-:21189988..21191303
Molecular Weight (calculated)
22631.3 Da
IEP (calculated)
4.348
GRAVY (calculated)
-0.799
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQSLNQDAI DEAIALDLQF DDLYLTINDQ YIALKIKQNE EAMSIQADED YAKMLQLQED EETAKTLHAM EENPPNIPQS DVPSTSRDTS GLNDGDRRQD
101: QPTLVVNQTA IENNNPGNGS GESTEVVNKE GLPENIISGL PTQKYSRKTW WWSKKTFVPD RKECSICIAD YEKGDKITIL PCKHAFHKDC IANWLKENKV
101: QPTLVVNQTA IENNNPGNGS GESTEVVNKE GLPENIISGL PTQKYSRKTW WWSKKTFVPD RKECSICIAD YEKGDKITIL PCKHAFHKDC IANWLKENKV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.