Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015221.1-P | Field mustard | nucleus | 57.95 | 75.71 |
| CDY37230 | Canola | nucleus | 55.26 | 73.17 |
| Bra039842.1-P | Field mustard | nucleus | 55.9 | 73.03 |
| CDY62314 | Canola | nucleus | 55.13 | 72.64 |
| PGSC0003DMT400079217 | Potato | cytosol | 8.59 | 67.68 |
| AT4G34040.1 | Thale cress | nucleus | 57.05 | 66.82 |
| Zm00001d026446_P001 | Maize | cytosol | 10.51 | 44.57 |
| VIT_03s0063g00160.t01 | Wine grape | nucleus | 33.59 | 35.69 |
| KRH50319 | Soybean | nucleus | 31.67 | 34.55 |
| KRH70661 | Soybean | mitochondrion, nucleus | 30.77 | 32.92 |
| Solyc01g107940.2.1 | Tomato | nucleus | 27.31 | 30.13 |
| PGSC0003DMT400066252 | Potato | nucleus | 26.92 | 29.37 |
| Solyc10g050170.1.1 | Tomato | mitochondrion, nucleus | 27.05 | 29.06 |
| Solyc01g107930.2.1 | Tomato | nucleus | 26.67 | 28.97 |
| GSMUA_Achr9P11290_001 | Banana | nucleus | 25.77 | 28.84 |
| HORVU2Hr1G113970.2 | Barley | cytosol, nucleus | 21.03 | 28.37 |
| GSMUA_Achr8P15680_001 | Banana | nucleus | 25.64 | 27.78 |
| TraesCS2B01G542200.2 | Wheat | nucleus | 23.59 | 27.46 |
| AT5G42940.1 | Thale cress | nucleus | 24.23 | 27.35 |
| AT1G45180.3 | Thale cress | nucleus | 22.44 | 27.13 |
| TraesCS2D01G516000.1 | Wheat | nucleus | 23.08 | 26.91 |
| TraesCS2A01G514400.3 | Wheat | nucleus | 23.08 | 26.91 |
| HORVU2Hr1G113930.2 | Barley | nucleus | 22.44 | 26.76 |
| Os04t0648800-01 | Rice | nucleus | 22.82 | 26.69 |
| Zm00001d002080_P002 | Maize | nucleus | 22.56 | 26.55 |
| EES11547 | Sorghum | nucleus | 22.44 | 26.52 |
| Zm00001d026445_P001 | Maize | nucleus | 21.41 | 25.5 |
| AT4G00070.1 | Thale cress | nucleus | 5.64 | 24.58 |
| EES10483 | Sorghum | nucleus | 21.79 | 24.43 |
| Zm00001d004300_P003 | Maize | nucleus | 21.67 | 24.35 |
| Zm00001d025027_P002 | Maize | nucleus | 21.54 | 24.14 |
| TraesCS2A01G022100.1 | Wheat | nucleus | 21.67 | 24.11 |
| TraesCS2D01G022900.1 | Wheat | nucleus | 21.67 | 24.11 |
| HORVU2Hr1G003340.5 | Barley | nucleus | 21.67 | 23.94 |
| TraesCS2B01G030700.1 | Wheat | nucleus | 21.41 | 23.82 |
| Os04t0185500-01 | Rice | nucleus | 21.54 | 23.7 |
| AT3G47180.1 | Thale cress | cytosol | 6.03 | 22.38 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 10.26 | 21.8 |
| AT5G24870.2 | Thale cress | nucleus | 14.49 | 21.73 |
| AT1G17970.1 | Thale cress | nucleus | 9.87 | 20.92 |
| AT5G52140.1 | Thale cress | nucleus | 7.31 | 20.36 |
| AT3G63530.2 | Thale cress | cytosol | 6.03 | 18.95 |
| AT5G10650.2 | Thale cress | nucleus | 12.56 | 18.67 |
| AT1G53190.1 | Thale cress | nucleus | 11.67 | 18.42 |
| AT5G52155.1 | Thale cress | nucleus | 4.23 | 18.13 |
| AT1G36950.1 | Thale cress | cytosol | 5.13 | 17.7 |
| AT3G15070.1 | Thale cress | nucleus | 10.77 | 17.28 |
| AT5G52150.1 | Thale cress | cytosol, nucleus, peroxisome | 4.36 | 17.0 |
| AT4G31450.2 | Thale cress | nucleus | 10.64 | 16.7 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 12.44 | 16.19 |
| AT3G19910.1 | Thale cress | nucleus | 6.79 | 15.59 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:816045 | ProteinID:AEC06414.1 | ArrayExpress:AT2G15530 | EnsemblPlantsGene:AT2G15530 |
| RefSeq:AT2G15530 | TAIR:AT2G15530 | RefSeq:AT2G15530-TAIR-G | EnsemblPlants:AT2G15530.4 | TAIR:AT2G15530.4 | Unigene:At.43472 |
| UniProt:F4IIG9 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_001189530.1 | PFAM:PF13639 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50089 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF101 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0001E92CF5 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
Coordinates
chr2:+:6773117..6777985
Molecular Weight (calculated)
85236.7 Da
IEP (calculated)
7.738
GRAVY (calculated)
-0.591
Length
780 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPIFRFNK
701: ERRLCLFIMR MIKMIVPKPL GTSDKIGTIQ RRLAWLLRKD DTYKSEKCYK KFSIQNFQID FSELIVLLNN INFGSHSMNL
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPIFRFNK
701: ERRLCLFIMR MIKMIVPKPL GTSDKIGTIQ RRLAWLLRKD DTYKSEKCYK KFSIQNFQID FSELIVLLNN INFGSHSMNL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.