Factsheet for Os04t0185500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G022900.1	Wheat	nucleus	67.0	67.76
TraesCS2A01G022100.1	Wheat	nucleus	67.0	67.76
TraesCS2B01G030700.1	Wheat	nucleus	66.57	67.33
HORVU2Hr1G003340.5	Barley	nucleus	66.15	66.43
GSMUA_Achr4P06090_001	Banana	cytosol	13.68	65.99
EES10483	Sorghum	nucleus	63.89	65.09
Zm00001d004300_P003	Maize	nucleus	62.76	64.12
PGSC0003DMT400079217	Potato	cytosol	8.89	63.64
Zm00001d025027_P002	Maize	nucleus	61.5	62.64
GSMUA_Achr4P12850_001	Banana	nucleus	19.46	30.26
Bra015221.1-P	Field mustard	nucleus	22.99	27.3
GSMUA_Achr9P22530_001	Banana	nucleus	24.54	27.02
VIT_03s0063g00160.t01	Wine grape	nucleus	27.93	26.98
Os04t0648800-01	Rice	nucleus	24.82	26.39
AT4G34040.1	Thale cress	nucleus	24.12	25.68
CDY62314	Canola	nucleus	21.3	25.51
CDY37230	Canola	nucleus	20.87	25.13
Bra039842.1-P	Field mustard	nucleus	21.02	24.96
KRH50319	Soybean	nucleus	24.12	23.92
KRH70661	Soybean	mitochondrion, nucleus	23.7	23.05
PGSC0003DMT400066252	Potato	nucleus	23.13	22.94
Os03t0173900-01	Rice	nucleus	7.9	22.4
Os05t0564300-01	Rice	nucleus	15.8	22.4
Solyc01g107940.2.1	Tomato	nucleus	21.72	21.78
Solyc01g107930.2.1	Tomato	nucleus	22.0	21.73
AT2G15530.4	Thale cress	nucleus	23.7	21.54
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	21.72	21.21
Os04t0603200-01	Rice	nucleus	9.73	20.97
Os05t0550000-00	Rice	nucleus	10.58	20.6
Os08t0241400-00	Rice	nucleus	10.86	20.42
Os04t0571200-01	Rice	nucleus	6.91	19.29
Os01t0667700-02	Rice	nucleus	14.1	19.08
Os01t0159300-01	Rice	nucleus	13.26	18.76
Os09t0535100-01	Rice	nucleus	8.18	17.85
Os05t0163400-03	Rice	nucleus	13.4	17.82
Os06t0695600-01	Rice	nucleus	14.53	17.79
Os08t0548300-01	Rice	nucleus	7.62	17.7
Os02t0150700-01	Rice	extracellular	15.37	17.0
Os06t0125800-01	Rice	nucleus	6.21	16.86

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4335112	EMBL:AK064939	ProteinID:BAF14106.1	ProteinID:BAS87996.1
InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os04g0185500	EnsemblPlants:Os04t0185500-01	PFAM:PF13639	PFscan:PS50089
PANTHER:PTHR22937	PANTHER:PTHR22937:SF94	UniProt:Q0JEY1	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0000DD8F5A
RefSeq:XP_015635980.1	RefSeq:XP_015635981.1	RefSeq:XP_015635982.1	RefSeq:XP_015635983.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

RING finger proteinSimilar to Protein containing C-terminal RING-finger. (Os04t0185500-01)

Coordinates

chr4:+:5802095..5810965

Molecular Weight (calculated)

77561.7 Da

IEP (calculated)

6.540

GRAVY (calculated)

-0.650

Length

709 amino acids

Sequence
(BLAST)

001: MHQHRITMLS SSETCHLGSS SNNQAMDQQN LLPSNPTADE QNLLPNTLED DDYPHYLLGS HEVEMPNGSV IGQQNTSLNL WDSAGSSSMG CVADHDSLFE
101: AKREHFAPAL SIRAPLIIGG RRHEGSSSLP SQSLNLDLNL NQADQFDSED VDMIQSNGQP GINAFPLNRG LSIPEHVLRH TNSSSATGNP SQVASFSDGM
201: TGQEVNLFGG HRSSCKRKNI DGSLAESSAN GSSRNNQRNN IILEPSPSSH ESTSGLTAPA PTNHVFSYSP VEQLNQNTNM SANAMLSDHY SLYGDHERER
301: FLRNTRMRTS PNEYDQSSSN LLPEGSLRCS VYQPTQQQSL FIPVQPRASS SSTSSLSRPY VPAVTQFSQN LHRAPSSGNF GSRIGIFPSS ADTTNQLSSQ
401: DPNRSSVRGN FPEPLLLGSS LFPSDSAELL SMPGGRSNQQ NSSSTIRTAV NIGAQQIAGL NASQPTSSSR GSVDIVRRSL QAASVPQSRG SSITSQQQRG
501: HSSTSHEIRS HQPGSSSRAN QQHYVRAVPH SVDRQNSNYL DLQSFMQSIA ASRDGIRTVS ESANQLVHLR NVVEQIRQGR GGRFEDPNFE RALFARRASL
601: IDRHRDMRLD VDNMSYEELL ALGERIGYVN TGLSEDKIRT GLKQWKYVSI PIEEPLTGVE PCCICQEEYA EGEDMGRLDC GHDFHTACIK QWLVIKNLCP
701: ICKKTGLGT

Best Arabidopsis Sequence Match ( AT2G15530.6 )
(BLAST)

001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHDPPDVRSS SITSGSNTGE NQTNIVHLPA LTRNIHQYAW DASFSSRASN PSGIGMPAER LGPQWETPRS NQEQPLFAPA TDMRQPVHDL
401: WNFARGSPGS SVDSLFVPRA GPSSAIHTPQ PNPTWIPPQN APPHNPSRTS ELSPWSLFPS IESPSASHGG PLPLLPAGPS VSSNEVTMPS SSNSRSHRSR
501: HRRSGLLLER QNELLHLRHI GRSLAADGNG RNQIISEIRQ VLHAMRRGEN LRVEDYMVFD PLIYQGMTDM HDRHREMRLD VDNMSYEELL ALGERIGDVS
601: TGLSEEVILK AMKQHKHTSS SPSSVELHQN IEPCCICQEE YVEGDNLGTL KCGHEFHKDC IKQWVMIKNL CPICKTEALK TP

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.