Factsheet for Os03t0173900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G112900.1	Wheat	nucleus	88.0	88.0
KXG40075	Sorghum	cytosol	86.8	87.15
TraesCS4B01G191300.1	Wheat	nucleus	87.6	83.59
Zm00001d027868_P004	Maize	cytosol	85.6	79.26
TraesCS4D01G192500.2	Wheat	cytosol, nucleus, vacuole	84.4	78.15
Zm00001d048301_P001	Maize	cytosol	71.6	74.27
HORVU4Hr1G055690.5	Barley	peroxisome, plastid	88.4	62.78
GSMUA_Achr8P31290_001	Banana	nucleus	60.8	60.08
VIT_06s0004g01930.t01	Wine grape	nucleus	55.2	54.76
KRH24699	Soybean	nucleus	52.0	52.42
Solyc11g062260.1.1	Tomato	nucleus	51.2	52.03
KRH29702	Soybean	nucleus	51.6	52.02
PGSC0003DMT400082375	Potato	nucleus	50.0	50.81
Os04t0571200-01	Rice	nucleus	35.2	34.65
Os06t0125800-01	Rice	nucleus	31.6	30.27
Os08t0548300-01	Rice	nucleus	30.0	24.59
Os09t0535100-01	Rice	nucleus	31.6	24.31
Os05t0550000-00	Rice	nucleus	19.6	13.46
Os08t0241400-00	Rice	nucleus	16.8	11.14
Os05t0564300-01	Rice	nucleus	20.8	10.4
Os01t0667700-02	Rice	nucleus	20.4	9.73
Os04t0603200-01	Rice	nucleus	12.8	9.73
Os06t0695600-01	Rice	nucleus	20.4	8.81
Os01t0159300-01	Rice	nucleus	17.2	8.58
Os05t0163400-03	Rice	nucleus	18.0	8.44
Os04t0648800-01	Rice	nucleus	21.6	8.1
Os04t0185500-01	Rice	nucleus	22.4	7.9
Os02t0150700-01	Rice	extracellular	18.4	7.18

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4331787	ProteinID:ABF94247.1	EMBL:AK063978	ProteinID:BAF11037.1
ProteinID:BAS82560.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161	GO:GO:0048437	GO:GO:0061630
InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os03g0173900	EnsemblPlants:Os03t0173900-01	PFAM:PF13639	PFscan:PS50089
PANTHER:PTHR14155	PANTHER:PTHR14155:SF170	UniProt:Q10R22	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0000DB44DB
RefSeq:XP_015632748.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0173900-01)

Coordinates

chr3:+:3961041..3966305

Molecular Weight (calculated)

28679.5 Da

IEP (calculated)

6.337

GRAVY (calculated)

-0.665

Length

250 amino acids

Sequence
(BLAST)

001: MNGSRQMELH YINTGFPYTI TESFMDFFEG LTYAHADFAI ADAFHDQANP YWAMMHTNSY KYGYSGAGNY YSYGHVYDMN DYMHRADGGR RIWDNATPVN
101: NTESPNVVLQ GGETPHANTS STTEECIQQQ VHQNSSSPQV IWQDNIDPDN MTYEELLDLG EAVGTQSRGL SQERISLLPV TKYKCGFFSR KKTRRERCVI
201: CQMEYRRGNL QMTLPCKHVY HASCVTRWLS INKVCPVCFA EVPGDEPKRQ

Best Arabidopsis Sequence Match ( AT3G63530.1 )
(BLAST)

001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH

Arabidopsis Description

BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.