Factsheet for TraesCS4A01G112900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G191300.1	Wheat	nucleus	98.8	94.27
Os03t0173900-01	Rice	nucleus	88.0	88.0
TraesCS4D01G192500.2	Wheat	cytosol, nucleus, vacuole	94.4	87.41
KXG40075	Sorghum	cytosol	81.6	81.93
Zm00001d027868_P004	Maize	cytosol	80.4	74.44
Zm00001d048301_P001	Maize	cytosol	68.8	71.37
HORVU4Hr1G055690.5	Barley	peroxisome, plastid	96.4	68.47
GSMUA_Achr8P31290_001	Banana	nucleus	60.0	59.29
VIT_06s0004g01930.t01	Wine grape	nucleus	51.2	50.79
PGSC0003DMT400082375	Potato	nucleus	48.8	49.59
Solyc11g062260.1.1	Tomato	nucleus	48.8	49.59
KRH24699	Soybean	nucleus	48.4	48.79
KRH29702	Soybean	nucleus	48.0	48.39
TraesCS5A01G312800.1	Wheat	cytosol, nucleus, plastid	26.0	38.01
TraesCS2A01G400200.1	Wheat	nucleus	36.4	35.97
TraesCS7A01G271500.1	Wheat	cytosol, mitochondrion, nucleus	32.0	27.78
TraesCS7A01G054700.2	Wheat	nucleus	27.2	26.98
TraesCS4A01G441400.1	Wheat	nucleus	26.8	26.8
TraesCS5A01G325400.2	Wheat	nucleus	31.2	21.08
TraesCS3A01G260500.1	Wheat	nucleus	18.4	13.33
TraesCS2A01G437200.1	Wheat	nucleus	17.2	11.65
TraesCS1A01G373200.1	Wheat	nucleus	16.0	11.46
TraesCS3A01G246900.3	Wheat	nucleus	21.6	10.25
TraesCS1A01G398300.8	Wheat	cytosol	20.8	9.65
TraesCS1A01G107600.1	Wheat	nucleus	18.8	8.75
TraesCS3A01G103000.1	Wheat	nucleus	16.8	8.09
TraesCS2A01G514400.3	Wheat	nucleus	21.6	8.07
TraesCS6A01G121400.2	Wheat	nucleus	18.4	7.89
TraesCS2A01G022100.1	Wheat	nucleus	20.8	7.42
TraesCS7A01G428300.2	Wheat	nucleus	14.0	6.02

Protein Annotations

EnsemblPlants:TraesCS4A01G112900.1	EnsemblPlantsGene:TraesCS4A01G112900	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF170	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4A:-:137182552..137188395

Molecular Weight (calculated)

28543.5 Da

IEP (calculated)

5.886

GRAVY (calculated)

-0.644

Length

250 amino acids

Sequence
(BLAST)

001: MNGSRQMELH YINTGYPYTI TESFMDFFEG LTYAQADFAL ADAFQDQANP YWTMMQTNSY KYGYSGAGNY YSYGHVYDMN DYMHRADSGR RIWDNPMPVN
101: NTDSPNIVLQ GAEAPHASAS STTEERIQQP VHQNSSSPQV VWQDSIDPDN MTYEELLDLG EAVGTQSRGL SQESISALPI TKFKCGLFSR KKKRRERCVI
201: CQMEYRRGDL QMALPCKHVY HASCVTKWLT INKVCPVCFA EVPGEEPKRQ

Best Arabidopsis Sequence Match ( AT3G63530.1 )
(BLAST)

001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH

Arabidopsis Description

BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.