Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH24699 | Soybean | nucleus | 67.46 | 68.55 |
| KRH29702 | Soybean | nucleus | 67.46 | 68.55 |
| Solyc11g062260.1.1 | Tomato | nucleus | 61.9 | 63.41 |
| PGSC0003DMT400082375 | Potato | nucleus | 60.32 | 61.79 |
| GSMUA_Achr4P03550_001 | Banana | mitochondrion | 13.89 | 58.33 |
| VIT_13s0064g01030.t01 | Wine grape | nucleus | 55.56 | 56.68 |
| Os03t0173900-01 | Rice | nucleus | 54.76 | 55.2 |
| KXG40075 | Sorghum | cytosol | 51.19 | 51.81 |
| TraesCS4A01G112900.1 | Wheat | nucleus | 50.79 | 51.2 |
| Zm00001d048301_P001 | Maize | cytosol | 48.41 | 50.62 |
| GSMUA_Achr4P13930_001 | Banana | nucleus | 48.41 | 49.19 |
| GSMUA_Achr8P31290_001 | Banana | nucleus | 49.21 | 49.01 |
| TraesCS4B01G191300.1 | Wheat | nucleus | 50.4 | 48.47 |
| Zm00001d027868_P004 | Maize | cytosol | 51.19 | 47.78 |
| GSMUA_Achr4P03540_001 | Banana | nucleus | 35.32 | 45.18 |
| TraesCS4D01G192500.2 | Wheat | cytosol, nucleus, vacuole | 48.02 | 44.81 |
| VIT_07s0031g00400.t01 | Wine grape | cytoskeleton, cytosol, nucleus | 16.27 | 40.2 |
| HORVU4Hr1G055690.5 | Barley | peroxisome, plastid | 51.19 | 36.65 |
| VIT_11s0118g00640.t01 | Wine grape | nucleus | 15.87 | 33.61 |
| VIT_12s0028g01220.t01 | Wine grape | nucleus | 28.57 | 32.88 |
| VIT_07s0031g00380.t01 | Wine grape | cytosol | 9.13 | 32.86 |
| VIT_18s0001g02280.t01 | Wine grape | nucleus | 26.59 | 32.37 |
| VIT_07s0031g00370.t01 | Wine grape | mitochondrion | 17.86 | 31.03 |
| VIT_16s0022g00290.t01 | Wine grape | nucleus | 9.13 | 30.26 |
| VIT_10s0042g00580.t01 | Wine grape | nucleus | 27.38 | 22.4 |
| VIT_07s0031g00440.t01 | Wine grape | nucleus | 15.87 | 18.18 |
| VIT_07s0031g00390.t01 | Wine grape | nucleus | 17.06 | 17.62 |
| VIT_01s0011g04080.t01 | Wine grape | nucleus | 19.05 | 13.68 |
| VIT_17s0000g03210.t01 | Wine grape | nucleus | 19.05 | 12.94 |
| VIT_08s0040g02160.t01 | Wine grape | nucleus | 25.0 | 11.54 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 23.02 | 10.55 |
| VIT_19s0014g01850.t01 | Wine grape | nucleus | 22.22 | 10.41 |
| VIT_13s0019g04100.t01 | Wine grape | extracellular | 21.43 | 9.56 |
| VIT_18s0001g10260.t01 | Wine grape | nucleus | 26.19 | 8.99 |
| VIT_03s0088g00930.t01 | Wine grape | nucleus, plastid | 13.89 | 8.91 |
| VIT_03s0088g01090.t01 | Wine grape | nucleus | 15.48 | 8.53 |
| VIT_03s0063g00160.t01 | Wine grape | nucleus | 24.21 | 8.31 |
| VIT_03s0097g00680.t01 | Wine grape | nucleus | 13.49 | 8.08 |
Protein Annotations
| EntrezGene:100265517 | wikigene:100265517 | Gene3D:3.30.40.10 | MapMan:35.1 | ProteinID:CBI16397 | ProteinID:CBI16397.3 |
| UniProt:D7SL69 | EMBL:FN594951 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 | GO:GO:0048437 |
| GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | EntrezGene:LOC100265517 | wikigene:LOC100265517 | PFAM:PF13639 |
| PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF170 | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:TC57847 |
| UniParc:UPI000198367C | ArrayExpress:VIT_06s0004g01930 | EnsemblPlantsGene:VIT_06s0004g01930 | EnsemblPlants:VIT_06s0004g01930.t01 | unigene:Vvi.14793 | RefSeq:XP_002285497 |
| RefSeq:XP_002285497.1 | RefSeq:XP_002285498 | RefSeq:XP_002285498.1 | RefSeq:XP_010651250.1 | RefSeq:XP_010651251.1 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:2373671..2382922
Molecular Weight (calculated)
28687.5 Da
IEP (calculated)
5.560
GRAVY (calculated)
-0.561
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MSWNPQMDAH YMNTSYPYST VGSFMDYFEG LAYEHVNFIF ATASHGQESP YASSMNTSLY KFGLSETGST SYYDYDQAYV VNDHVPGISE YRRTPENSSA
101: ITTDQIPTVN TQCEGNTNTT TTHATPVECP RSHPNSQDYQ VIWQDNIDPD NMTYEELLEL GEAVGTQSRG LSQELISLLP ISKYKCGFFT RKKSRCERCV
201: ICQMEYKRRD RLITLPCKHV YHAACGTRWL SINKACPICY TEVIGEVPKI DK
101: ITTDQIPTVN TQCEGNTNTT TTHATPVECP RSHPNSQDYQ VIWQDNIDPD NMTYEELLEL GEAVGTQSRG LSQELISLLP ISKYKCGFFT RKKSRCERCV
201: ICQMEYKRRD RLITLPCKHV YHAACGTRWL SINKACPICY TEVIGEVPKI DK
001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
Arabidopsis Description
BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.