Factsheet for TraesCS4D01G192500.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, vacuole

Predictor Summary:

nucleus 1
mitochondrion 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G112900.1	Wheat	nucleus	87.41	94.4
TraesCS4B01G191300.1	Wheat	nucleus	88.52	91.22
Os03t0173900-01	Rice	nucleus	78.15	84.4
KXG40075	Sorghum	cytosol	71.85	77.91
Zm00001d027868_P004	Maize	cytosol	71.85	71.85
Zm00001d048301_P001	Maize	cytosol	60.0	67.22
HORVU4Hr1G055690.5	Barley	peroxisome, plastid	84.81	65.06
GSMUA_Achr8P31290_001	Banana	nucleus	52.96	56.52
PGSC0003DMT400082375	Potato	nucleus	44.07	48.37
Solyc11g062260.1.1	Tomato	nucleus	44.07	48.37
VIT_06s0004g01930.t01	Wine grape	nucleus	44.81	48.02
KRH24699	Soybean	nucleus	43.33	47.18
KRH29702	Soybean	nucleus	42.96	46.77
TraesCS5D01G319600.1	Wheat	cytosol, nucleus, plastid	22.59	35.67
TraesCS2D01G397800.1	Wheat	cytosol	31.48	33.07
TraesCS5D01G286700.1	Wheat	nucleus	14.44	33.05
TraesCS7D01G049800.1	Wheat	nucleus	23.7	25.5
TraesCS7D01G271800.4	Wheat	cytosol, mitochondrion, nucleus	27.78	25.0
TraesCS5D01G331600.1	Wheat	cytosol, mitochondrion, nucleus	29.26	23.24
TraesCS3D01G260700.1	Wheat	nucleus	15.56	21.0
TraesCS2D01G432800.1	Wheat	nucleus	15.56	11.29
TraesCS1D01G380000.2	Wheat	nucleus	14.44	11.27
TraesCS3D01G244600.1	Wheat	nucleus	20.0	10.23
TraesCS1D01G405800.9	Wheat	cytosol	19.26	9.92
TraesCS1D01G111500.1	Wheat	nucleus	16.67	8.4
TraesCS3D01G105300.1	Wheat	cytosol	15.56	8.11
TraesCS2D01G516000.1	Wheat	nucleus	20.0	8.07
TraesCS6D01G111500.2	Wheat	nucleus	17.04	7.63
TraesCS2D01G022900.1	Wheat	nucleus	19.63	7.56
TraesCS7D01G420400.1	Wheat	nucleus	15.56	7.33

Protein Annotations

EnsemblPlants:TraesCS4D01G192500.2	EnsemblPlantsGene:TraesCS4D01G192500	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF170	PFAM:PF13639	PFscan:PS50089	SEG:seg
SUPFAM:SSF57850	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:335774057..335777696

Molecular Weight (calculated)

30606.1 Da

IEP (calculated)

5.879

GRAVY (calculated)

-0.471

Length

270 amino acids

Sequence
(BLAST)

001: MNGSRQMELH YINTGYPYTI TESFMDFFEG LTYAQADFAL ADAFQDQANP YWTMMQTNSY KYGYSGAGNY YSYGHVYDMN DYMHRADSGR RIWDNPMPVN
101: STDSPNIVLQ GAEAPHANAS STTEERIQQP VHQNSSSPQV VWQDSIDPDN MTYEELLDLG EAVGTQSRGL SQESISALPV TKFKCGLFSR KKKRRERCVI
201: CQMEYRRGDL QMALPCKHVY HASCVTKWLT INKVSANERE QPVSASCFYP LPLYLTGVCI CSVGMPCLLC

Best Arabidopsis Sequence Match ( AT3G63530.1 )
(BLAST)

001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH

Arabidopsis Description

BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.