Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0173900-01 | Rice | nucleus | 87.15 | 86.8 |
| Zm00001d027868_P004 | Maize | cytosol | 91.97 | 84.81 |
| TraesCS4A01G112900.1 | Wheat | nucleus | 81.93 | 81.6 |
| Zm00001d048301_P001 | Maize | cytosol | 76.71 | 79.25 |
| TraesCS4B01G191300.1 | Wheat | nucleus | 81.53 | 77.48 |
| TraesCS4D01G192500.2 | Wheat | cytosol, nucleus, vacuole | 77.91 | 71.85 |
| GSMUA_Achr8P31290_001 | Banana | nucleus | 60.24 | 59.29 |
| HORVU4Hr1G055690.5 | Barley | peroxisome, plastid | 83.13 | 58.81 |
| VIT_06s0004g01930.t01 | Wine grape | nucleus | 51.81 | 51.19 |
| KRH29702 | Soybean | nucleus | 50.2 | 50.4 |
| KRH24699 | Soybean | nucleus | 50.2 | 50.4 |
| Solyc11g062260.1.1 | Tomato | nucleus | 49.4 | 50.0 |
| PGSC0003DMT400082375 | Potato | nucleus | 49.4 | 50.0 |
| EER99218 | Sorghum | nucleus | 28.92 | 41.14 |
| OQU80744 | Sorghum | mitochondrion | 21.69 | 37.5 |
| EES11283 | Sorghum | nucleus | 33.33 | 33.6 |
| KXG19166 | Sorghum | nucleus | 30.12 | 27.57 |
| EER97094 | Sorghum | nucleus | 33.33 | 25.62 |
| EES15239 | Sorghum | nucleus | 31.33 | 24.84 |
| EES18624 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 19.28 | 12.77 |
| OQU87370 | Sorghum | nucleus | 16.87 | 12.03 |
| EES12797 | Sorghum | nucleus | 18.07 | 12.03 |
| OQU80147 | Sorghum | nucleus | 16.87 | 11.73 |
| KXG22536 | Sorghum | nucleus | 20.88 | 10.24 |
| EES03404 | Sorghum | nucleus | 21.29 | 10.17 |
| EES04530 | Sorghum | nucleus | 19.28 | 9.27 |
| EES19093 | Sorghum | nucleus | 18.47 | 8.55 |
| EES00281 | Sorghum | nucleus | 16.87 | 8.16 |
| KXG20741 | Sorghum | nucleus | 18.47 | 7.8 |
| EES11547 | Sorghum | nucleus | 20.48 | 7.73 |
| EES10483 | Sorghum | nucleus | 20.08 | 7.18 |
Protein Annotations
| EnsemblPlants:KXG40075 | EnsemblPlantsGene:SORBI_3001G487200 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF170 | PFAM:PF13639 | PFscan:PS50089 | ProteinID:KXG40075 |
| ProteinID:KXG40075.1 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00081ADFFA | UniProt:A0A1B6QQ85 | MapMan:35.1 |
Description
hypothetical protein
Coordinates
chr1:-:75739248..75744516
Molecular Weight (calculated)
28591.5 Da
IEP (calculated)
6.081
GRAVY (calculated)
-0.642
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSCRQMELH YINTGFPYTI TESFMDFFEG LTYAHADFAL MDGFQDQGNP YWAMMHTNSY KYGYSGPGNY YTYAHVYDID DYMHRADGGR RVWDNTTPAN
101: NVDSANVVLQ GSEAPRTTAN TTTEECIQQV HQSPGSPQVV WQDNIDPDNM TYEELLDLGE VVGTQSRGLS QERISSLPVT KYKCGFFSRK KTRRERCVIC
201: QMEYRRGNLQ MTLPCKHVYH ASCVTRWLSI NKVCPVCFAE VPGDEPKRQ
101: NVDSANVVLQ GSEAPRTTAN TTTEECIQQV HQSPGSPQVV WQDNIDPDNM TYEELLDLGE VVGTQSRGLS QERISSLPVT KYKCGFFSRK KTRRERCVIC
201: QMEYRRGNLQ MTLPCKHVYH ASCVTRWLSI NKVCPVCFAE VPGDEPKRQ
001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
Arabidopsis Description
BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.