Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d024406_P002 | Maize | nucleus | 84.64 | 84.64 |
| Os08t0241400-00 | Rice | nucleus | 62.01 | 58.89 |
| EES12797 | Sorghum | nucleus | 53.07 | 50.8 |
| Bra024009.1-P | Field mustard | nucleus | 13.97 | 28.57 |
| CDY13429 | Canola | cytosol | 19.55 | 27.13 |
| OQU80744 | Sorghum | mitochondrion | 10.61 | 26.39 |
| CDX97032 | Canola | plastid | 23.18 | 24.78 |
| CDY71882 | Canola | plastid | 23.46 | 24.0 |
| EER99218 | Sorghum | nucleus | 11.45 | 23.43 |
| CDX85750 | Canola | nucleus | 25.14 | 23.32 |
| CDY40109 | Canola | nucleus | 10.61 | 20.43 |
| CDX95473 | Canola | nucleus | 24.86 | 19.18 |
| OQU87370 | Sorghum | nucleus | 18.16 | 18.62 |
| CDX70363 | Canola | nucleus | 24.86 | 18.31 |
| CDX97044 | Canola | nucleus | 25.98 | 18.24 |
| CDX78393 | Canola | nucleus | 25.14 | 18.22 |
| Bra006070.1-P | Field mustard | nucleus | 25.14 | 18.18 |
| EES04530 | Sorghum | nucleus | 25.98 | 17.95 |
| EES18624 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 18.44 | 17.55 |
| AT5G10650.2 | Thale cress | nucleus | 25.7 | 17.52 |
| KRH04957 | Soybean | nucleus | 25.98 | 17.48 |
| KRH16134 | Soybean | nucleus | 27.09 | 17.48 |
| Bra009015.1-P | Field mustard | plastid | 25.98 | 17.45 |
| EES11283 | Sorghum | nucleus | 12.01 | 17.41 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 26.54 | 17.27 |
| CDY68658 | Canola | nucleus | 22.63 | 17.27 |
| CDX69813 | Canola | mitochondrion | 25.7 | 17.26 |
| KRH52597 | Soybean | nucleus | 25.98 | 17.19 |
| Solyc08g006460.2.1 | Tomato | nucleus | 25.42 | 17.14 |
| AT5G24870.2 | Thale cress | nucleus | 24.86 | 17.12 |
| CDY63645 | Canola | nucleus | 22.07 | 17.1 |
| PGSC0003DMT400075959 | Potato | nucleus | 25.98 | 17.06 |
| PGSC0003DMT400067670 | Potato | nucleus | 25.14 | 17.05 |
| Solyc12g096420.1.1 | Tomato | nucleus | 25.98 | 16.88 |
| KXG40075 | Sorghum | cytosol | 11.73 | 16.87 |
| CDX88140 | Canola | nucleus | 22.63 | 16.8 |
| Bra024007.1-P | Field mustard | nucleus | 21.79 | 16.7 |
| CDY13433 | Canola | nucleus | 21.51 | 16.52 |
| AT4G31450.2 | Thale cress | nucleus | 22.07 | 15.9 |
| KXG19166 | Sorghum | nucleus | 12.01 | 15.81 |
| EES15239 | Sorghum | nucleus | 13.41 | 15.29 |
| KXG20741 | Sorghum | nucleus | 25.14 | 15.25 |
| EER97094 | Sorghum | nucleus | 13.41 | 14.81 |
| EES03404 | Sorghum | nucleus | 21.51 | 14.78 |
| EES00281 | Sorghum | nucleus | 20.95 | 14.56 |
| KRH61936 | Soybean | nucleus | 21.51 | 13.82 |
| KXG22536 | Sorghum | nucleus | 19.55 | 13.78 |
| EES19093 | Sorghum | nucleus | 19.55 | 13.01 |
| Bra009800.1-P | Field mustard | nucleus | 14.8 | 12.93 |
| EES11547 | Sorghum | nucleus | 20.95 | 11.36 |
| EES10483 | Sorghum | nucleus | 19.55 | 10.06 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:8073233 | UniProt:C5YJF4 | ProteinID:EES13583.1 | InterPro:IPR001841 |
| InterPro:IPR013083 | ProteinID:KXG24795.1 | ProteinID:OQU80146.1 | EnsemblPlants:OQU80147 | ProteinID:OQU80147 | ProteinID:OQU80147.1 |
| PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF44 | SMART:SM00184 | EnsemblPlantsGene:SORBI_3007G086900 |
| SUPFAM:SSF57850 | UniParc:UPI0001A87C15 | RefSeq:XP_002444088.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
hypothetical protein
Coordinates
chr7:+:11698016..11703354
Molecular Weight (calculated)
40439.4 Da
IEP (calculated)
8.699
GRAVY (calculated)
-0.794
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MDETMGRRTV SGLLVTKGGS ILVFREESPR HKATTCCTRL GCSSKLFPNK DRKTRRASME TSAHQRSQVL RKSNRMSPQG SISYDRSTSR NTASTFGETD
101: NIPRRKENPG CDLLARLKER VNASRKRSLG GLGSPNISST NTSSSSRSFS RSICQPASRM RKDGGRVAEA MRMHKARENS GSSREDVLTR NSIQDPSDRF
201: LSQSLLRRRS RLQQGPVSSF EDTLDYSSEY WHFDMDDSEE VEDYYVFNDQ HRGMRMDIDD MSYEDLLALG ERIGTVSTGL SDDALSKCLK RSLYVPTTSS
301: SHEDGDIKCI ICQEEYSSDV EVAKMACKHY YHTTCIQQWL QQKNWCPICK CVASVISS
101: NIPRRKENPG CDLLARLKER VNASRKRSLG GLGSPNISST NTSSSSRSFS RSICQPASRM RKDGGRVAEA MRMHKARENS GSSREDVLTR NSIQDPSDRF
201: LSQSLLRRRS RLQQGPVSSF EDTLDYSSEY WHFDMDDSEE VEDYYVFNDQ HRGMRMDIDD MSYEDLLALG ERIGTVSTGL SDDALSKCLK RSLYVPTTSS
301: SHEDGDIKCI ICQEEYSSDV EVAKMACKHY YHTTCIQQWL QQKNWCPICK CVASVISS
001: MDGCAGKRSV DRLVVPRKAS GLTLRENMNK TDGKNVPFCS RVGCTAKVTS TKRSRIGSTD NNTKVGLPPV PSTLNRKEIV GSSSRTPGGF GYLRKPAKVT
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
Arabidopsis Description
At5g10650 [Source:UniProtKB/TrEMBL;Acc:Q5XEP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.