CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014609_P002	Maize	nucleus	87.63	88.38
Os06t0695600-01	Rice	nucleus	61.02	62.18
TraesCS7B01G328500.1	Wheat	nucleus	59.32	60.55
TraesCS7D01G420400.1	Wheat	nucleus	57.97	59.69
HORVU7Hr1G098540.1	Barley	nucleus	58.31	58.7
TraesCS7A01G428300.2	Wheat	nucleus	53.73	54.56
EES04530	Sorghum	nucleus	40.0	45.56
CDX97032	Canola	plastid	23.9	42.09
CDY71882	Canola	plastid	24.58	41.43
GSMUA_Achr3P05160_001	Banana	nucleus	38.81	38.88
CDX85750	Canola	nucleus	24.41	37.31
CDY40109	Canola	nucleus	11.36	36.02
VIT_04s0008g02390.t01	Wine grape	nucleus	33.56	36.0
GSMUA_Achr6P03840_001	Banana	nucleus	21.86	34.77
CDY68658	Canola	nucleus	27.12	34.12
KRH04957	Soybean	nucleus	30.68	34.02
CDX78393	Canola	nucleus	28.47	34.01
CDX95473	Canola	nucleus	26.61	33.84
CDX88140	Canola	nucleus	27.63	33.82
Bra024009.1-P	Field mustard	nucleus	10.0	33.71
Bra006070.1-P	Field mustard	nucleus	28.14	33.54
CDX70363	Canola	nucleus	27.29	33.13
KRH16134	Soybean	nucleus	31.02	32.97
PGSC0003DMT400067670	Potato	nucleus	29.32	32.77
CDX97044	Canola	nucleus	28.31	32.75
AT5G24870.2	Thale cress	nucleus	28.47	32.31
Solyc08g006460.2.1	Tomato	nucleus	28.81	32.02
KRH52597	Soybean	nucleus	29.32	31.98
AT5G10650.2	Thale cress	nucleus	28.31	31.81
PGSC0003DMT400075959	Potato	nucleus	28.47	30.83
Bra009015.1-P	Field mustard	plastid	27.8	30.77
CDX69813	Canola	mitochondrion	27.8	30.77
CDY13429	Canola	cytosol	13.22	30.23
Solyc12g096420.1.1	Tomato	nucleus	28.14	30.13
GSMUA_Achr10P...	Banana	nucleus	24.24	28.26
KRH61936	Soybean	nucleus	26.27	27.83
Bra009800.1-P	Field mustard	nucleus	18.64	26.83
EES12797	Sorghum	nucleus	16.78	26.47
OQU80744	Sorghum	mitochondrion	6.44	26.39
OQU80147	Sorghum	nucleus	15.25	25.14
OQU87370	Sorghum	nucleus	14.75	24.93
GSMUA_Achr7P15850_001	Banana	nucleus	25.93	23.54
EER99218	Sorghum	nucleus	6.44	21.71
EES18624	Sorghum	cytosol, mitochondrion, nucleus, plastid	13.22	20.74
Bra024007.1-P	Field mustard	nucleus	15.59	19.7
CDY63645	Canola	nucleus	15.42	19.7
AT4G31450.2	Thale cress	nucleus	16.44	19.52
CDY13433	Canola	nucleus	15.25	19.31
KXG40075	Sorghum	cytosol	7.8	18.47
KXG19166	Sorghum	nucleus	8.31	18.01
EES11283	Sorghum	nucleus	7.29	17.41
EES15239	Sorghum	nucleus	8.98	16.88
EES10483	Sorghum	nucleus	18.64	15.8
KXG22536	Sorghum	nucleus	13.56	15.75
EER97094	Sorghum	nucleus	8.64	15.74
EES03404	Sorghum	nucleus	13.9	15.74
EES00281	Sorghum	nucleus	13.39	15.34
EES11547	Sorghum	nucleus	16.95	15.15
EES19093	Sorghum	nucleus	13.39	14.68

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8063811	UniProt:C5Z8S8	ProteinID:EER90299.1	InterPro:IPR001841
InterPro:IPR013083	EnsemblPlants:KXG20741	ProteinID:KXG20741	ProteinID:KXG20741.1	ProteinID:OQU76977.1	PFAM:PF13639
PFscan:PS50089	PANTHER:PTHR22937	PANTHER:PTHR22937:SF99	SMART:SM00184	EnsemblPlantsGene:SORBI_3010G246000	SUPFAM:SSF57850
unigene:Sbi.9113	UniParc:UPI0001A89761	RefSeq:XP_002438932.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:58568569..58576606

Molecular Weight (calculated)

65499.8 Da

IEP (calculated)

7.421

GRAVY (calculated)

-0.854

Length

590 amino acids

Sequence
(BLAST)

001: MDESSCRSTT PVGFLRRGSG ISLRNQSNED RPSQYNKQPG KSSNLNPVKS RFTENKEKPR YFQGPFHSSG SRASSVSSSK APVRKYCDER QKRPFLAETD
101: IAESSNRRTE VRCLQRGKKA SVFGDGHPYM QKGTSEASSS STTTEESLPE EHDLGVLDVS GSSGNSAHAV NSRNTALSAM AHRQKDKEEL NSGSHQGAST
201: FVRRRTLPQS FTTGVKSSTA PSTNITGAQR RGLKNLGCTS ISDVLPSGCS SSDSVRDRRV EVTKKRTSDA ESSSRSRGIS EQSNLSQPRA SYPGSTGPRA
301: RAVEQLASQQ IARTNSRSIQ DPTDSIRTRR PFTLRARERM IPGEREDSVF ALHETVASVH PECGHFHTDG APPERLGRPF YAELPHAIYS SNRQGSSSQT
401: ARRRSTSRTE ESPQRMFHGM FGERDGYRHV SMEGIAQALL ALDRIEHDDE LTYEQLLVLE TNLLLSGLDL HDQHEDLRLD IDNMSYEELL ALEDHIGSVS
501: TALTEEQFAK CVNQSVYEAR NSGRDVNKIA ADDVKCSICQ EEYIEGEEIG TMQCEHQYHV CCIHEWLRQK NWCPICKASA IPSEMNKGDA

Best Arabidopsis Sequence Match ( AT5G10650.1 )
(BLAST)

001: MDGCAGKRSV DRLVVPRKAS GLTLRENMNK TDGKNVPFCS RVGCTAKVTS TKRSRIGSTD NNTKVGLPPV PSTLNRKEIV GSSSRTPGGF GYLRKPAKVT
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI

Arabidopsis Description

At5g10650 [Source:UniProtKB/TrEMBL;Acc:Q5XEP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.