Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g006460.2.1 | Tomato | nucleus | 93.75 | 93.22 |
| PGSC0003DMT400075959 | Potato | nucleus | 63.07 | 61.1 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 10.42 | 59.78 |
| Zm00001d019616_P001 | Maize | cytosol | 13.26 | 54.26 |
| Zm00001d015453_P001 | Maize | cytosol | 13.07 | 53.49 |
| Zm00001d013776_P001 | Maize | cytosol | 12.88 | 52.71 |
| PGSC0003DMT400079217 | Potato | cytosol | 9.47 | 50.51 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 50.76 | 48.73 |
| GSMUA_AchrUn_... | Banana | nucleus | 19.89 | 46.67 |
| CDX97032 | Canola | plastid | 29.55 | 46.57 |
| CDX85750 | Canola | nucleus | 33.52 | 45.85 |
| CDY71882 | Canola | plastid | 29.73 | 44.86 |
| KRH52597 | Soybean | nucleus | 44.51 | 43.44 |
| KRH04957 | Soybean | nucleus | 43.56 | 43.23 |
| KRH16134 | Soybean | nucleus | 44.32 | 42.16 |
| Bra006070.1-P | Field mustard | nucleus | 38.64 | 41.21 |
| CDX78393 | Canola | nucleus | 38.45 | 41.09 |
| CDX70363 | Canola | nucleus | 37.31 | 40.53 |
| CDX95473 | Canola | nucleus | 35.61 | 40.52 |
| CDX97044 | Canola | nucleus | 38.64 | 40.0 |
| CDY68658 | Canola | nucleus | 35.23 | 39.66 |
| KRH61936 | Soybean | nucleus | 41.48 | 39.32 |
| AT5G10650.2 | Thale cress | nucleus | 38.83 | 39.05 |
| CDX88140 | Canola | nucleus | 35.61 | 39.0 |
| AT5G24870.2 | Thale cress | nucleus | 37.69 | 38.27 |
| CDY40109 | Canola | nucleus | 13.45 | 38.17 |
| Bra009015.1-P | Field mustard | plastid | 37.88 | 37.52 |
| CDX69813 | Canola | mitochondrion | 37.69 | 37.34 |
| Bra024009.1-P | Field mustard | nucleus | 11.36 | 34.29 |
| CDY13429 | Canola | cytosol | 15.15 | 31.01 |
| TraesCS7B01G328500.1 | Wheat | nucleus | 33.71 | 30.8 |
| Bra009800.1-P | Field mustard | nucleus | 23.86 | 30.73 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 34.09 | 30.72 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 32.77 | 30.19 |
| EES04530 | Sorghum | nucleus | 29.36 | 29.92 |
| Os06t0695600-01 | Rice | nucleus | 32.77 | 29.88 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 28.79 | 29.57 |
| KXG20741 | Sorghum | nucleus | 32.77 | 29.32 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 32.2 | 29.16 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 31.06 | 29.08 |
| PGSC0003DMT400020398 | Potato | nucleus | 9.66 | 28.81 |
| Zm00001d015289_P001 | Maize | nucleus | 30.87 | 28.8 |
| Zm00001d014609_P002 | Maize | nucleus | 31.63 | 28.55 |
| Os02t0150700-01 | Rice | extracellular | 34.09 | 28.08 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 31.82 | 27.86 |
| TraesCS7A01G428300.2 | Wheat | nucleus | 29.73 | 27.02 |
| EES12797 | Sorghum | nucleus | 17.99 | 25.4 |
| TraesCS2A01G437200.1 | Wheat | nucleus | 17.61 | 25.2 |
| OQU80147 | Sorghum | nucleus | 17.05 | 25.14 |
| HORVU2Hr1G101370.5 | Barley | nucleus | 17.8 | 25.07 |
| TraesCS2B01G456100.1 | Wheat | nucleus | 17.61 | 24.93 |
| PGSC0003DMT400078539 | Potato | plastid | 11.74 | 24.9 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 32.58 | 24.75 |
| TraesCS2D01G432800.1 | Wheat | nucleus | 17.42 | 24.73 |
| Zm00001d024406_P002 | Maize | nucleus | 16.48 | 24.3 |
| Os08t0241400-00 | Rice | nucleus | 16.86 | 23.61 |
| Zm00001d026248_P001 | Maize | nucleus | 16.86 | 23.42 |
| Os04t0603200-01 | Rice | nucleus | 14.58 | 23.4 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 17.23 | 22.92 |
| PGSC0003DMT400014732 | Potato | nucleus | 16.29 | 22.16 |
| Bra024007.1-P | Field mustard | nucleus | 19.13 | 21.63 |
| CDY13433 | Canola | nucleus | 18.94 | 21.46 |
| CDY63645 | Canola | nucleus | 18.56 | 21.21 |
| AT4G31450.2 | Thale cress | nucleus | 19.32 | 20.52 |
| PGSC0003DMT400017553 | Potato | nucleus | 9.09 | 19.75 |
| PGSC0003DMT400082375 | Potato | nucleus | 8.71 | 18.7 |
| PGSC0003DMT400004449 | Potato | nucleus | 17.99 | 17.53 |
| PGSC0003DMT400095772 | Potato | cytosol | 5.87 | 16.67 |
| PGSC0003DMT400039849 | Potato | nucleus | 21.02 | 16.02 |
| PGSC0003DMT400066252 | Potato | nucleus | 21.59 | 15.94 |
| PGSC0003DMT400037132 | Potato | nucleus | 7.2 | 15.9 |
| PGSC0003DMT400039631 | Potato | nucleus | 14.58 | 14.37 |
| PGSC0003DMT400054921 | Potato | nucleus | 13.83 | 14.07 |
| PGSC0003DMT400020528 | Potato | nucleus | 17.99 | 13.79 |
| PGSC0003DMT400032385 | Potato | nucleus | 14.77 | 9.61 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400067670 | EnsemblPlantsGene:PGSC0003DMG402026315 | EntrezGene:102582551 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF53 | PFAM:PF13639 | PFscan:PS50089 |
| PGSC:PGSC0003DMG402026315 | RefSeq:XP_006357056.1 | RefSeq:XP_015168752.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0002956D10 | UniProt:M1CHP2 | MapMan:35.1 | : | : | : |
Description
Ring finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG402026315]
Coordinates
chr8:-:2161547..2167596
Molecular Weight (calculated)
57646.9 Da
IEP (calculated)
7.593
GRAVY (calculated)
-0.706
Length
528 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEYSSKRAV NGLYVPRRGL TDIADSRDEN VQLCSRYGCS SRHNSMKSPQ VRSTEKPRPL RPSFTSSNGK EVVGSSCRTP SVMANARKSL KDRKTNSHVG
101: NDQSETTCSH GEPEASEHMK SSKAHQPQFN SVIQDTGSSK ITLKEVGCSS GASSSKPRRL FTPKYSNQNS PVGSSVSSSS KAIGAGTRGT ASGAGYVPTN
201: LKCNSRSDIS PQSCSTADSR FSRRDMVKRR NSDGESTSSS KGKKVSGALP KGGDVIRPTR GISISDSRSS KNFDIREDSR AVSVRTRRSM NVPRLRDSVR
301: DSSSGFFQNS PQPESPNFSL QSSSQFFSDA SSSDSSAFSF PGNDAEDLPA GVSGTSAQLG INQLMNRDAL QRYNMDGVAQ VLVALERMEQ DEELTYEQLL
401: VLETNLFLGG LNFYDQHRGM RLDIDNMSYE ELLALEERMG SVSTALSEEA LSKCIQKSIY QAMPSEIGEF GSDENEDEVK CTICQEEYVI GDEIGRLECD
501: HGYHVVCVKH WLSLKNWCPI CKASAAPS
101: NDQSETTCSH GEPEASEHMK SSKAHQPQFN SVIQDTGSSK ITLKEVGCSS GASSSKPRRL FTPKYSNQNS PVGSSVSSSS KAIGAGTRGT ASGAGYVPTN
201: LKCNSRSDIS PQSCSTADSR FSRRDMVKRR NSDGESTSSS KGKKVSGALP KGGDVIRPTR GISISDSRSS KNFDIREDSR AVSVRTRRSM NVPRLRDSVR
301: DSSSGFFQNS PQPESPNFSL QSSSQFFSDA SSSDSSAFSF PGNDAEDLPA GVSGTSAQLG INQLMNRDAL QRYNMDGVAQ VLVALERMEQ DEELTYEQLL
401: VLETNLFLGG LNFYDQHRGM RLDIDNMSYE ELLALEERMG SVSTALSEEA LSKCIQKSIY QAMPSEIGEF GSDENEDEVK CTICQEEYVI GDEIGRLECD
501: HGYHVVCVKH WLSLKNWCPI CKASAAPS
001: MDGCAGKRSV DRLVVPRKAS GLTLRENMNK TDGKNVPFCS RVGCTAKVTS TKRSRIGSTD NNTKVGLPPV PSTLNRKEIV GSSSRTPGGF GYLRKPAKVT
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
Arabidopsis Description
At5g10650 [Source:UniProtKB/TrEMBL;Acc:Q5XEP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.