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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400039670

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G42940.1 PGSC0003DMT400039670 AT1G52890.1 12646039
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc12g088740.1.1 Tomato nucleus 95.38 95.38
KRH05664 Soybean nucleus 12.12 69.42
PGSC0003DMT400079217 Potato cytosol 9.24 64.65
PGSC0003DMT400020528 Potato nucleus 53.97 54.28
VIT_18s0001g10260.t01 Wine grape nucleus 50.79 47.96
KRH52013 Soybean nucleus 43.15 42.23
KRH61306 Soybean nucleus 39.11 41.44
Bra027467.1-P Field mustard nucleus 23.81 40.24
KRH61311 Soybean nucleus 42.14 39.78
CDY32973 Canola nucleus 23.38 39.51
CDY43590 Canola nucleus 23.95 39.43
CDY17114 Canola nucleus 29.58 38.61
AT1G45180.3 Thale cress nucleus 32.76 35.19
CDY22376 Canola nucleus 31.02 34.96
Bra033652.1-P Field mustard nucleus 31.02 34.96
CDY17061 Canola nucleus 30.45 34.82
CDY43220 Canola nucleus 30.3 34.48
CDX71531 Canola nucleus 31.6 34.38
AT5G42940.1 Thale cress nucleus 33.33 33.43
Bra014043.1-P Field mustard nucleus 27.27 32.81
PGSC0003DMT400066252 Potato nucleus 32.18 31.19
PGSC0003DMT400020398 Potato nucleus 6.93 27.12
PGSC0003DMT400078539 Potato plastid 8.95 24.9
PGSC0003DMT400017553 Potato nucleus 8.23 23.46
PGSC0003DMT400014732 Potato nucleus 13.13 23.45
PGSC0003DMT400004449 Potato nucleus 18.18 23.25
PGSC0003DMT400082375 Potato nucleus 8.08 22.76
PGSC0003DMT400039631 Potato nucleus 17.17 22.2
PGSC0003DMT400067670 Potato nucleus 16.02 21.02
PGSC0003DMT400037132 Potato nucleus 7.07 20.5
PGSC0003DMT400075959 Potato nucleus 16.02 20.37
PGSC0003DMT400054921 Potato nucleus 15.15 20.23
PGSC0003DMT400095772 Potato cytosol 4.91 18.28
PGSC0003DMT400032385 Potato nucleus 14.72 12.56
Protein Annotations
EnsemblPlants:PGSC0003DMT400039849EnsemblPlantsGene:PGSC0003DMG400015408EntrezGene:102580028Gene3D:3.30.40.10InterPro:IPR001841InterPro:IPR013083
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR14155PANTHER:PTHR14155:SF464PFAM:PF13639PFscan:PS50089
PGSC:PGSC0003DMG400015408RefSeq:XP_006342634.1RefSeq:XP_006342635.1RefSeq:XP_015162115.1SEG:segSMART:SM00184
SUPFAM:SSF57850UniParc:UPI000295D06AUniProt:M1B8V6MapMan:35.1::
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015408]
Coordinates
chr12:+:56556620..56563138
Molecular Weight (calculated)
75490.4 Da
IEP (calculated)
6.432
GRAVY (calculated)
-0.654
Length
693 amino acids
Sequence
(BLAST)
001: MQGKQNTVGS LQETLGFNHG STPSEGGVDQ QICWNSLQNS AQNHLPDYMV SSNATNIPFF NPMSQERQNV TRGSLGESSS SIAPNCASQS EQKADHGWSS
101: AMTTYHEPSL ICNEQQCGSS NIMSLNDFFS QGSSSSTIPH EINRNPAFEG RSDNNDDGCQ VMECTPYNSV RPGKERMSSA CTYLGNGCLT DDSGDGRPES
201: SPDSRRFCKR KTLEGYLAQS SGSGSSDYIP LAENSIWHSG PASHSMSTDA NISAPTESVR SINMSEHVIP RLGLTMGGAA AVTPVGTPAS RSAESSHRNF
301: RVRIDGSLQQ DYLPSNIFPD VDNVGNVNRS SEQQLPELLP NIPLDLRSVP AADSGNTQRQ PVVMHVSSLH RRAQTRWSSA SSSRTGSSSS SARERNSATF
401: EEPNSRSVSR NISQHPMFIP STNGRNLNQN PASLNLAGRN VSVAGNVASS SGVHTSSPNR VLHRSPQYHR RLSELVRRSL LSPASTGSGG VNGNSRPLRL
501: SSPISQEMAL PGNHEHRTSS ALERHLDDAI GLSNSSRTLT AAREGRSRLV TEIRHVLDLM RRGEGLSVED VMILDQSVFF GMPEIQDRHR DMRLDVDNMS
601: YEELLALGER IGDVCTGLSE ETISSRLKQR NFISIKTEQP EEAEPCCICR EEYNNGDGLG TLECGHDFHT DCIKQWLMQK NLCPVCKTTG LTT
Best Arabidopsis Sequence Match ( AT1G45180.4 )
(BLAST)
001: MQGERASLGS LSKALNFERG STSSNAVVDQ QIRWENLHNY GDNDLQDYMS SAADTNPTFA NSVYHEKRGL QRFNIGEASS SGTKNEGASL TEQWKGIGRF
101: EEQRNDKLEL SPLFVQPSNG SRVVRDVNLN AEYNEHLEDM NPVTVHPGHF EVNGLRSEFL LDNSVRAGSS VDGRRASCKR KALDASGGQS SSTGGFREFQ
201: RGVSSSWISG PTYYSPAMTA NDLNISLDHG RRGLVSSAVP NLSPPTITES SSRNYPVWVN PTYQQETVSN FAPSLNSPGL IPADHQQISM RYGHALGNFA
301: SQNPNAPATH MPPVSRNTFQ WNTSPVAAVI SSSSATPVDR NVIHRNATRQ RSNTLEIPLF VPAPELRNVA HGHISRNASG ARHVASSSSR TSVQPSPSSP
401: ALTPYQNNSL HNQRRLSENF RRSLLSSLVT QQRAARSLAH PASPNEHVLQ SGGDNTSQVH NRASSRAGPR QGQDATGISH SLRGLASTSR GRTRMGASEI
501: RNILEHMRRA GNLRLEDVML LNQSIMLGAA DIHDRYRDMR LDVDNMTYEE LLSLEERIGD VCTGLNEETI SNRLKQQKYK SSTRSSQEVE PCCVCQEEYK
601: EEEEIGRLEC GHDFHSQCIK EWLKQKNLCP ICKTTGLNTA NKPQR
Arabidopsis Description
F27F5.26 [Source:UniProtKB/TrEMBL;Acc:Q9MAJ1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.