Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
PGSC0003DMT400039670 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G42940.1 | PGSC0003DMT400039670 | AT1G52890.1 | 12646039 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc12g088740.1.1 | Tomato | nucleus | 95.38 | 95.38 |
KRH05664 | Soybean | nucleus | 12.12 | 69.42 |
PGSC0003DMT400079217 | Potato | cytosol | 9.24 | 64.65 |
PGSC0003DMT400020528 | Potato | nucleus | 53.97 | 54.28 |
VIT_18s0001g10260.t01 | Wine grape | nucleus | 50.79 | 47.96 |
KRH52013 | Soybean | nucleus | 43.15 | 42.23 |
KRH61306 | Soybean | nucleus | 39.11 | 41.44 |
Bra027467.1-P | Field mustard | nucleus | 23.81 | 40.24 |
KRH61311 | Soybean | nucleus | 42.14 | 39.78 |
CDY32973 | Canola | nucleus | 23.38 | 39.51 |
CDY43590 | Canola | nucleus | 23.95 | 39.43 |
CDY17114 | Canola | nucleus | 29.58 | 38.61 |
AT1G45180.3 | Thale cress | nucleus | 32.76 | 35.19 |
CDY22376 | Canola | nucleus | 31.02 | 34.96 |
Bra033652.1-P | Field mustard | nucleus | 31.02 | 34.96 |
CDY17061 | Canola | nucleus | 30.45 | 34.82 |
CDY43220 | Canola | nucleus | 30.3 | 34.48 |
CDX71531 | Canola | nucleus | 31.6 | 34.38 |
AT5G42940.1 | Thale cress | nucleus | 33.33 | 33.43 |
Bra014043.1-P | Field mustard | nucleus | 27.27 | 32.81 |
PGSC0003DMT400066252 | Potato | nucleus | 32.18 | 31.19 |
PGSC0003DMT400020398 | Potato | nucleus | 6.93 | 27.12 |
PGSC0003DMT400078539 | Potato | plastid | 8.95 | 24.9 |
PGSC0003DMT400017553 | Potato | nucleus | 8.23 | 23.46 |
PGSC0003DMT400014732 | Potato | nucleus | 13.13 | 23.45 |
PGSC0003DMT400004449 | Potato | nucleus | 18.18 | 23.25 |
PGSC0003DMT400082375 | Potato | nucleus | 8.08 | 22.76 |
PGSC0003DMT400039631 | Potato | nucleus | 17.17 | 22.2 |
PGSC0003DMT400067670 | Potato | nucleus | 16.02 | 21.02 |
PGSC0003DMT400037132 | Potato | nucleus | 7.07 | 20.5 |
PGSC0003DMT400075959 | Potato | nucleus | 16.02 | 20.37 |
PGSC0003DMT400054921 | Potato | nucleus | 15.15 | 20.23 |
PGSC0003DMT400095772 | Potato | cytosol | 4.91 | 18.28 |
PGSC0003DMT400032385 | Potato | nucleus | 14.72 | 12.56 |
Protein Annotations
EnsemblPlants:PGSC0003DMT400039849 | EnsemblPlantsGene:PGSC0003DMG400015408 | EntrezGene:102580028 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF464 | PFAM:PF13639 | PFscan:PS50089 |
PGSC:PGSC0003DMG400015408 | RefSeq:XP_006342634.1 | RefSeq:XP_006342635.1 | RefSeq:XP_015162115.1 | SEG:seg | SMART:SM00184 |
SUPFAM:SSF57850 | UniParc:UPI000295D06A | UniProt:M1B8V6 | MapMan:35.1 | : | : |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015408]
Coordinates
chr12:+:56556620..56563138
Molecular Weight (calculated)
75490.4 Da
IEP (calculated)
6.432
GRAVY (calculated)
-0.654
Length
693 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGKQNTVGS LQETLGFNHG STPSEGGVDQ QICWNSLQNS AQNHLPDYMV SSNATNIPFF NPMSQERQNV TRGSLGESSS SIAPNCASQS EQKADHGWSS
101: AMTTYHEPSL ICNEQQCGSS NIMSLNDFFS QGSSSSTIPH EINRNPAFEG RSDNNDDGCQ VMECTPYNSV RPGKERMSSA CTYLGNGCLT DDSGDGRPES
201: SPDSRRFCKR KTLEGYLAQS SGSGSSDYIP LAENSIWHSG PASHSMSTDA NISAPTESVR SINMSEHVIP RLGLTMGGAA AVTPVGTPAS RSAESSHRNF
301: RVRIDGSLQQ DYLPSNIFPD VDNVGNVNRS SEQQLPELLP NIPLDLRSVP AADSGNTQRQ PVVMHVSSLH RRAQTRWSSA SSSRTGSSSS SARERNSATF
401: EEPNSRSVSR NISQHPMFIP STNGRNLNQN PASLNLAGRN VSVAGNVASS SGVHTSSPNR VLHRSPQYHR RLSELVRRSL LSPASTGSGG VNGNSRPLRL
501: SSPISQEMAL PGNHEHRTSS ALERHLDDAI GLSNSSRTLT AAREGRSRLV TEIRHVLDLM RRGEGLSVED VMILDQSVFF GMPEIQDRHR DMRLDVDNMS
601: YEELLALGER IGDVCTGLSE ETISSRLKQR NFISIKTEQP EEAEPCCICR EEYNNGDGLG TLECGHDFHT DCIKQWLMQK NLCPVCKTTG LTT
101: AMTTYHEPSL ICNEQQCGSS NIMSLNDFFS QGSSSSTIPH EINRNPAFEG RSDNNDDGCQ VMECTPYNSV RPGKERMSSA CTYLGNGCLT DDSGDGRPES
201: SPDSRRFCKR KTLEGYLAQS SGSGSSDYIP LAENSIWHSG PASHSMSTDA NISAPTESVR SINMSEHVIP RLGLTMGGAA AVTPVGTPAS RSAESSHRNF
301: RVRIDGSLQQ DYLPSNIFPD VDNVGNVNRS SEQQLPELLP NIPLDLRSVP AADSGNTQRQ PVVMHVSSLH RRAQTRWSSA SSSRTGSSSS SARERNSATF
401: EEPNSRSVSR NISQHPMFIP STNGRNLNQN PASLNLAGRN VSVAGNVASS SGVHTSSPNR VLHRSPQYHR RLSELVRRSL LSPASTGSGG VNGNSRPLRL
501: SSPISQEMAL PGNHEHRTSS ALERHLDDAI GLSNSSRTLT AAREGRSRLV TEIRHVLDLM RRGEGLSVED VMILDQSVFF GMPEIQDRHR DMRLDVDNMS
601: YEELLALGER IGDVCTGLSE ETISSRLKQR NFISIKTEQP EEAEPCCICR EEYNNGDGLG TLECGHDFHT DCIKQWLMQK NLCPVCKTTG LTT
001: MQGERASLGS LSKALNFERG STSSNAVVDQ QIRWENLHNY GDNDLQDYMS SAADTNPTFA NSVYHEKRGL QRFNIGEASS SGTKNEGASL TEQWKGIGRF
101: EEQRNDKLEL SPLFVQPSNG SRVVRDVNLN AEYNEHLEDM NPVTVHPGHF EVNGLRSEFL LDNSVRAGSS VDGRRASCKR KALDASGGQS SSTGGFREFQ
201: RGVSSSWISG PTYYSPAMTA NDLNISLDHG RRGLVSSAVP NLSPPTITES SSRNYPVWVN PTYQQETVSN FAPSLNSPGL IPADHQQISM RYGHALGNFA
301: SQNPNAPATH MPPVSRNTFQ WNTSPVAAVI SSSSATPVDR NVIHRNATRQ RSNTLEIPLF VPAPELRNVA HGHISRNASG ARHVASSSSR TSVQPSPSSP
401: ALTPYQNNSL HNQRRLSENF RRSLLSSLVT QQRAARSLAH PASPNEHVLQ SGGDNTSQVH NRASSRAGPR QGQDATGISH SLRGLASTSR GRTRMGASEI
501: RNILEHMRRA GNLRLEDVML LNQSIMLGAA DIHDRYRDMR LDVDNMTYEE LLSLEERIGD VCTGLNEETI SNRLKQQKYK SSTRSSQEVE PCCVCQEEYK
601: EEEEIGRLEC GHDFHSQCIK EWLKQKNLCP ICKTTGLNTA NKPQR
101: EEQRNDKLEL SPLFVQPSNG SRVVRDVNLN AEYNEHLEDM NPVTVHPGHF EVNGLRSEFL LDNSVRAGSS VDGRRASCKR KALDASGGQS SSTGGFREFQ
201: RGVSSSWISG PTYYSPAMTA NDLNISLDHG RRGLVSSAVP NLSPPTITES SSRNYPVWVN PTYQQETVSN FAPSLNSPGL IPADHQQISM RYGHALGNFA
301: SQNPNAPATH MPPVSRNTFQ WNTSPVAAVI SSSSATPVDR NVIHRNATRQ RSNTLEIPLF VPAPELRNVA HGHISRNASG ARHVASSSSR TSVQPSPSSP
401: ALTPYQNNSL HNQRRLSENF RRSLLSSLVT QQRAARSLAH PASPNEHVLQ SGGDNTSQVH NRASSRAGPR QGQDATGISH SLRGLASTSR GRTRMGASEI
501: RNILEHMRRA GNLRLEDVML LNQSIMLGAA DIHDRYRDMR LDVDNMTYEE LLSLEERIGD VCTGLNEETI SNRLKQQKYK SSTRSSQEVE PCCVCQEEYK
601: EEEEIGRLEC GHDFHSQCIK EWLKQKNLCP ICKTTGLNTA NKPQR
Arabidopsis Description
F27F5.26 [Source:UniProtKB/TrEMBL;Acc:Q9MAJ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.