Factsheet for Bra027467.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018998.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42940.1	Bra018998.1-P	AT1G52890.1	12646039

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32973	Canola	nucleus	98.05	98.05
KRH05664	Soybean	nucleus	18.78	63.64
Bra033652.1-P	Field mustard	nucleus	75.85	50.57
AT5G42940.1	Thale cress	nucleus	77.07	45.73
Bra014043.1-P	Field mustard	nucleus	50.49	35.94
Bra036336.1-P	Field mustard	nucleus	31.71	25.84
Bra024009.1-P	Field mustard	nucleus	10.98	25.71
Bra019499.1-P	Field mustard	nucleus	10.24	25.61
Solyc04g078680.2.1	Tomato	nucleus	44.63	25.35
VIT_18s0001g10260.t01	Wine grape	nucleus	44.88	25.07
Solyc12g088740.1.1	Tomato	nucleus	40.49	23.95
PGSC0003DMT400039849	Potato	nucleus	40.24	23.81
KRH52013	Soybean	nucleus	40.98	23.73
KRH61306	Soybean	nucleus	37.56	23.55
PGSC0003DMT400020528	Potato	nucleus	38.29	22.79
KRH61311	Soybean	nucleus	40.0	22.34
Bra039842.1-P	Field mustard	nucleus	32.44	22.28
Bra015221.1-P	Field mustard	nucleus	30.98	21.27
Bra003830.1-P	Field mustard	nucleus, plastid	16.1	19.47
Bra040450.1-P	Field mustard	nucleus	11.22	19.01
Bra015967.1-P	Field mustard	nucleus	16.34	18.77
Bra016574.1-P	Field mustard	nucleus	15.85	18.16
Bra039659.1-P	Field mustard	nucleus	19.76	17.61
Bra038109.1-P	Field mustard	nucleus	20.24	17.29
Bra022580.1-P	Field mustard	cytosol	7.32	16.67
Bra023101.1-P	Field mustard	nucleus	21.22	16.32
Bra022579.1-P	Field mustard	cytosol	5.12	15.91
Bra017205.1-P	Field mustard	nucleus	20.49	15.64
Bra027282.1-P	Field mustard	nucleus	16.83	15.51
Bra001582.1-P	Field mustard	nucleus	16.34	15.33
Bra024007.1-P	Field mustard	nucleus	17.07	14.99
Bra006070.1-P	Field mustard	nucleus	17.56	14.55
Bra022466.1-P	Field mustard	nucleus	11.46	14.51
Bra038240.1-P	Field mustard	nucleus	11.22	13.81
Bra009015.1-P	Field mustard	plastid	17.56	13.51
Bra009800.1-P	Field mustard	nucleus	11.46	11.46
Bra028576.1-P	Field mustard	cytosol	7.32	10.6
Bra028293.1-P	Field mustard	nucleus	6.1	10.46

Protein Annotations

EnsemblPlants:Bra027467.1	EnsemblPlants:Bra027467.1-P	EnsemblPlantsGene:Bra027467	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF464	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002542155	UniProt:M4EFA5	MapMan:35.1

Description

AT1G45180 (E=2e-082) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA09:+:14113615..14115505

Molecular Weight (calculated)

44985.1 Da

IEP (calculated)

5.410

GRAVY (calculated)

-0.724

Length

410 amino acids

Sequence
(BLAST)

001: MQEERAILGF LSEALSFELG SSTSIDAVTD HWDHIHSLGD NDLHDYMIAN PEPSHEEQHD LHSEASSSGT KNEAASSHSE QRRNEDSEQP PSAPNQHVQN
101: SNPPALSVPP FQWTEVSLAA GSSTSTVPPV ERNLQLDETR PRSIPESPLF VPAPELRNAT SGDLNVASAV SRTGSATGVQ PPSYQNLPHQ QRRRSELARR
201: SLISSLAGSG DHPTLGASPD GLVLQPGGDR QGDGVSGAHH SFRALAAASR GRSSRLTVSQ MQNILDVMRR DPNHNLRLED VMLLNQSLLF DGAGGMHDRY
301: RDMRLDVDNM SYEELLALEE RIGDVCTGVN EETISNRLKQ RKFKSSTKSP QDAEPCCICQ EEYSEGEDMG ALECGHDFHS QCIKEWLKQK NLCPICKTTG
401: LNTAKKRKIG

Best Arabidopsis Sequence Match ( AT5G42940.1 )
(BLAST)

001: MQGERASLGY LSEALNFEHG SSSSNGVIDH WENIHSLGDN DLQDYMIANS ESNTSLANSV YHEQQGLRRF SLGEASSSGT KDEASSHNEQ RMETRCFDGR
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A

Arabidopsis Description

RHG1AProbable E3 ubiquitin-protein ligase RHG1A [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.