Factsheet for Bra017205.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68424	Canola	nucleus	97.02	97.02
CDY55435	Canola	nucleus	94.04	95.64
Bra023101.1-P	Field mustard	nucleus	78.03	78.61
AT2G37150.3	Thale cress	endoplasmic reticulum, extracellular	76.35	68.45
VIT_16s0022g00290.t01	Wine grape	nucleus	7.45	52.63
GSMUA_AchrUn_...	Banana	nucleus	8.94	42.86
VIT_13s0019g04100.t01	Wine grape	extracellular	35.38	33.63
Bra019499.1-P	Field mustard	nucleus	8.57	28.05
Bra024009.1-P	Field mustard	nucleus	9.12	28.0
GSMUA_Achr5P08460_001	Banana	nucleus	27.19	25.44
Bra040450.1-P	Field mustard	nucleus	10.06	22.31
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	21.23	22.27
Os01t0159300-01	Rice	nucleus	19.18	20.56
Bra024007.1-P	Field mustard	nucleus	17.88	20.56
Bra027467.1-P	Field mustard	nucleus	15.64	20.49
HORVU1Hr1G024190.2	Barley	nucleus	20.11	20.11
Os05t0163400-03	Rice	nucleus	19.74	19.89
TraesCS1B01G129600.1	Wheat	nucleus	19.74	19.85
TraesCS1D01G111500.1	Wheat	nucleus	19.74	19.78
TraesCS1A01G107600.1	Wheat	nucleus	19.74	19.74
Zm00001d008649_P003	Maize	cytosol	19.37	19.73
EES00281	Sorghum	nucleus	18.81	19.61
Bra039659.1-P	Field mustard	nucleus	16.76	19.57
Zm00001d039769_P002	Maize	cytosol	19.74	19.24
Bra003830.1-P	Field mustard	nucleus, plastid	12.1	19.17
Bra038109.1-P	Field mustard	nucleus	16.95	18.96
EES19093	Sorghum	nucleus	18.62	18.59
TraesCS3B01G120600.2	Wheat	cytosol	17.5	18.15
TraesCS3D01G105300.1	Wheat	cytosol	17.5	18.15
TraesCS3A01G103000.1	Wheat	nucleus	17.13	17.73
Bra001582.1-P	Field mustard	nucleus	14.34	17.62
Bra015967.1-P	Field mustard	nucleus	11.55	17.37
Bra016574.1-P	Field mustard	nucleus	11.36	17.04
Bra027282.1-P	Field mustard	nucleus	13.97	16.85
Bra022580.1-P	Field mustard	cytosol	5.59	16.67
Bra033652.1-P	Field mustard	nucleus	17.88	15.61
Bra015221.1-P	Field mustard	nucleus	17.32	15.58
Bra006070.1-P	Field mustard	nucleus	14.15	15.35
Bra038240.1-P	Field mustard	nucleus	9.5	15.32
HORVU3Hr1G018800.2	Barley	cytosol, plastid	16.76	15.28
Bra022466.1-P	Field mustard	nucleus	9.12	15.12
Bra039842.1-P	Field mustard	nucleus	16.57	14.91
Bra014043.1-P	Field mustard	nucleus	15.83	14.76
Bra009015.1-P	Field mustard	plastid	14.53	14.63
Bra022579.1-P	Field mustard	cytosol	3.35	13.64
Bra009800.1-P	Field mustard	nucleus	9.87	12.93
Bra036336.1-P	Field mustard	nucleus	9.5	10.14
Bra028293.1-P	Field mustard	nucleus	4.47	10.04
Bra028576.1-P	Field mustard	cytosol	4.66	8.83

Protein Annotations

EnsemblPlants:Bra017205.1	EnsemblPlants:Bra017205.1-P	EnsemblPlantsGene:Bra017205	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF47	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002544433	UniProt:M4DL24	MapMan:35.2

Description

AT2G37150 (E=9e-215) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA04:-:16053064..16055396

Molecular Weight (calculated)

60386.0 Da

IEP (calculated)

7.025

GRAVY (calculated)

-0.873

Length

537 amino acids

Sequence
(BLAST)

001: MGHRHFPGSF QFFDDEQDQG WNHIHPEHPY TSLARTGTSE SRSHVNPAGN VLNEGMPFSS HWNSSTGPNA YTASGHGVER LHYNPGTSGP THVPVMSSAA
101: ATFSAPLEHY VTSASSSYCN SQTWSLDGYV DLHMENVRGA QKRKTPCDSS VYEMGSSSHY HGGRTSSDIP FSSELDMGKS TTRDHDPHYM PWLMNPSYRS
201: NNLSIRGESS SRNVRSRPTL DLETSVDRNI FSRSLDLDSH PTHHNVEHSS SDQFPGQTSH RNKDWNWNFP RHSPVPRDLN GFSPKTNNFL PTRSVVNSTS
301: VDTSWYHQGL IGNRNSTVSH GFPGTSTQSA TSSRFSHRST PTYRSSSNAL RLEHSAYSSG DRSPFVTETY PSRHLRPPPH ISWRSSDRPG RRRSSYERFQ
401: PPFDEVALHE PFSSQGFMAV DHQQHYGSRN MHDHHRDLRL DIDDMTYEDL IDLVERIGSV NTGLSNGAIS SCLLETIFYP LYQTDEERKC AICLAEYKEG
501: EELGELKGCG HDYHGGCIKK WLSLKNSCPI CKSPAFT

Best Arabidopsis Sequence Match ( AT2G37150.14 )
(BLAST)

001: MRSEVYNMVG TCYKGLMGHR HFLGSSQFFD DEHDQGWNHT HPEHPYSSQA TSGTSENRSH VYPAENMLNE GMPVSSHWNS SPGPNAYTDS GHSVERPHYN
101: PGVSGPSHDP SVNSTVPTFS APHENYVTFA SSSSYNSQTW SNASYVDHQS MESVRGAQKR KRPCPSSIYE MGSSSQYHGD RTPADTHFPS ELHLGKSITH
201: DHDPHYMPWL MNPTYRSNNL SIRGESSSRN VRSRPTLDSE TSLGRNNLPR SLSLDSHSTH HHSVDHYGSG QFPGQTSHGN KDWNCARLSP VLRDINGFSP
301: ETNNFLPARS VVNSLSVNTS GYHHHELTGN RNPTVSHGVP GTSTLSTSSS RFSHRSTSTY RSSSHGSRSG HVASSSGDRS HLVTETYPSR HLRPPPHISW
401: RSGDRPGRRR SSYERFQPPF DEVALHERFS SEEFMVEDRQ PQYYGSRNML DHHRDMRLDI DNMSYEELLD LGERIGSVNT GLSDSAISSC LLATMYYPSY
501: QTEEQRKCAI CLEEYKEKEE LGEVKGCGHD YHGRCIKKWL SMKNSCPICK SPALPDASKN SS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.