Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00512 | Canola | nucleus | 97.07 | 84.98 |
| CDY31919 | Canola | nucleus | 93.31 | 81.69 |
| AT5G52140.1 | Thale cress | nucleus | 56.9 | 48.57 |
| Bra022579.1-P | Field mustard | cytosol | 22.59 | 40.91 |
| Bra022580.1-P | Field mustard | cytosol | 17.99 | 23.89 |
| Solyc03g026150.2.1 | Tomato | nucleus | 17.99 | 18.14 |
| PGSC0003DMT400037132 | Potato | nucleus | 17.15 | 17.15 |
| TraesCS2B01G418300.1 | Wheat | cytosol | 17.99 | 17.0 |
| Bra040450.1-P | Field mustard | nucleus | 17.15 | 16.94 |
| TraesCS2D01G397800.1 | Wheat | cytosol | 17.99 | 16.73 |
| HORVU2Hr1G094980.4 | Barley | cytosol | 18.41 | 16.6 |
| TraesCS2A01G400200.1 | Wheat | nucleus | 17.57 | 16.6 |
| Os04t0571200-01 | Rice | nucleus | 17.57 | 16.54 |
| EES11283 | Sorghum | nucleus | 15.9 | 15.38 |
| VIT_12s0028g01220.t01 | Wine grape | nucleus | 12.97 | 14.16 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 17.99 | 12.68 |
| Bra022466.1-P | Field mustard | nucleus | 17.15 | 12.65 |
| Bra038240.1-P | Field mustard | nucleus | 17.15 | 12.31 |
| Bra019499.1-P | Field mustard | nucleus | 8.37 | 12.2 |
| Zm00001d002624_P003 | Maize | cytosol | 16.32 | 11.61 |
| Bra003830.1-P | Field mustard | nucleus, plastid | 10.46 | 7.37 |
| Bra015967.1-P | Field mustard | nucleus | 10.46 | 7.0 |
| Bra024009.1-P | Field mustard | nucleus | 5.02 | 6.86 |
| Bra006070.1-P | Field mustard | nucleus | 13.81 | 6.67 |
| Bra027282.1-P | Field mustard | nucleus | 11.72 | 6.29 |
| Bra016574.1-P | Field mustard | nucleus | 9.21 | 6.15 |
| Bra027467.1-P | Field mustard | nucleus | 10.46 | 6.1 |
| Bra001582.1-P | Field mustard | nucleus | 10.88 | 5.95 |
| Bra038109.1-P | Field mustard | nucleus | 11.3 | 5.62 |
| Bra024007.1-P | Field mustard | nucleus | 10.88 | 5.57 |
| Bra009015.1-P | Field mustard | plastid | 12.13 | 5.44 |
| Bra039659.1-P | Field mustard | nucleus | 10.46 | 5.43 |
| Bra023101.1-P | Field mustard | nucleus | 10.88 | 4.88 |
| Bra015221.1-P | Field mustard | nucleus | 11.3 | 4.52 |
| Bra017205.1-P | Field mustard | nucleus | 10.04 | 4.47 |
| Bra028576.1-P | Field mustard | cytosol | 5.02 | 4.24 |
| Bra033652.1-P | Field mustard | nucleus | 10.88 | 4.23 |
| Bra039842.1-P | Field mustard | nucleus | 10.46 | 4.19 |
| Bra014043.1-P | Field mustard | nucleus | 8.79 | 3.65 |
| Bra009800.1-P | Field mustard | nucleus | 4.6 | 2.68 |
| Bra036336.1-P | Field mustard | nucleus | 5.02 | 2.39 |
Protein Annotations
Description
AT5G52140 (E=4e-058) | protein binding / zinc ion binding
Coordinates
chrA01:+:18878884..18881270
Molecular Weight (calculated)
27232.9 Da
IEP (calculated)
4.183
GRAVY (calculated)
-0.959
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRLVNQSSI DENIAMFLQF GLSEDSDLTV NDDVIAREIQ QQYPNNSDLT ANDDVIAREI QQQYQNNLTY DDTAIALEIQ KQEGNLPTSL SDDEKLARYL
101: QQQDESANST DEDIQGNNSY IPERDAPSTS RTIIQYDDDD HFSGHHTHTR TQSNSPSISS LDLSTNENTD PANMTYEELN ELEDSMGNVD RGLSQRRISK
201: LPTYKYGAET KTCCWQIRKK KFIATDTQYV AFAKPRFNP
101: QQQDESANST DEDIQGNNSY IPERDAPSTS RTIIQYDDDD HFSGHHTHTR TQSNSPSISS LDLSTNENTD PANMTYEELN ELEDSMGNVD RGLSQRRISK
201: LPTYKYGAET KTCCWQIRKK KFIATDTQYV AFAKPRFNP
001: MSRLVNQSSV DENIAVYLQN ELSELTVNDY AIGREIQQQY QNKSICNDAA IALEIQKEEE ACVHSCLHDD EGLARTLQDL EANLQPSLSD DEKLARYLQE
101: HDELANNTED DIQETHHHQY HPMQVNRSYI PQRDAPSSSR AIFHYDDGEN FSGRYTHTHS PSSISHNPTD DENNDPENMT YEELTELGDS VGDVGKGLSQ
201: ERISRLRTHK YGTKTKSWYC LHMKKKFVAD DSQCSICLME YAKGDKITTL PCKHIYHKDC ISQWLKQNKV CCICKAEVYP
101: HDELANNTED DIQETHHHQY HPMQVNRSYI PQRDAPSSSR AIFHYDDGEN FSGRYTHTHS PSSISHNPTD DENNDPENMT YEELTELGDS VGDVGKGLSQ
201: ERISRLRTHK YGTKTKSWYC LHMKKKFVAD DSQCSICLME YAKGDKITTL PCKHIYHKDC ISQWLKQNKV CCICKAEVYP
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q1PDK3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.