Factsheet for AT5G52140.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00512	Canola	nucleus	61.43	63.0
CDY31919	Canola	nucleus	59.64	61.17
Bra028293.1-P	Field mustard	nucleus	48.57	56.9
AT5G52155.1	Thale cress	nucleus	27.5	42.31
AT5G52150.1	Thale cress	cytosol, nucleus, peroxisome	24.29	34.0
Solyc03g026150.2.1	Tomato	nucleus	23.57	27.85
PGSC0003DMT400037132	Potato	nucleus	23.21	27.2
VIT_12s0028g01220.t01	Wine grape	nucleus	21.07	26.94
TraesCS2B01G418300.1	Wheat	cytosol	23.21	25.69
TraesCS2A01G400200.1	Wheat	nucleus	23.21	25.69
TraesCS2D01G397800.1	Wheat	cytosol	23.21	25.29
EES11283	Sorghum	nucleus	22.14	25.1
HORVU2Hr1G094980.4	Barley	cytosol	23.21	24.53
Os04t0571200-01	Rice	nucleus	21.79	24.02
AT3G63530.2	Thale cress	cytosol	20.0	22.58
AT3G47180.1	Thale cress	cytosol	15.0	20.0
GSMUA_Achr4P30500_001	Banana	nucleus	23.21	19.17
AT3G19910.1	Thale cress	nucleus	22.14	18.24
Zm00001d002624_P003	Maize	cytosol	21.43	17.86
AT4G00070.1	Thale cress	nucleus	11.07	17.32
AT1G73760.1	Thale cress	nucleus, plastid	15.71	11.99
AT1G17970.1	Thale cress	nucleus	14.64	11.14
AT1G36950.1	Thale cress	cytosol	8.93	11.06
AT3G15070.1	Thale cress	nucleus	18.57	10.7
AT1G53190.1	Thale cress	nucleus	18.57	10.53
AT5G24870.2	Thale cress	nucleus	17.5	9.42
AT5G10650.2	Thale cress	nucleus	17.5	9.33
AT4G31450.2	Thale cress	nucleus	16.07	9.05
AT1G45180.3	Thale cress	nucleus	19.64	8.53
AT4G34040.1	Thale cress	nucleus	18.93	7.96
AT5G42940.1	Thale cress	nucleus	18.93	7.67
AT2G37150.3	Thale cress	endoplasmic reticulum, extracellular	15.71	7.35
AT2G15530.4	Thale cress	nucleus	20.36	7.31

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:835290	ProteinID:AED96176.1	ArrayExpress:AT5G52140	EnsemblPlantsGene:AT5G52140
RefSeq:AT5G52140	TAIR:AT5G52140	RefSeq:AT5G52140-TAIR-G	EnsemblPlants:AT5G52140.1	TAIR:AT5G52140.1	Unigene:At.55498
InterPro:BB	EMBL:DQ447065	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0040007	GO:GO:0043161	GO:GO:0046621	GO:GO:0061630	InterPro:IPR001841
InterPro:IPR013083	RefSeq:NP_200027.2	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF75
UniProt:Q1PDK3	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0000D5BD31	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q1PDK3]

Coordinates

chr5:-:21184522..21186872

Molecular Weight (calculated)

32147.2 Da

IEP (calculated)

4.995

GRAVY (calculated)

-0.859

Length

280 amino acids

Sequence
(BLAST)

001: MSRLVNQSSV DENIAVYLQN ELSELTVNDY AIGREIQQQY QNKSICNDAA IALEIQKEEE ACVHSCLHDD EGLARTLQDL EANLQPSLSD DEKLARYLQE
101: HDELANNTED DIQETHHHQY HPMQVNRSYI PQRDAPSSSR AIFHYDDGEN FSGRYTHTHS PSSISHNPTD DENNDPENMT YEELTELGDS VGDVGKGLSQ
201: ERISRLRTHK YGTKTKSWYC LHMKKKFVAD DSQCSICLME YAKGDKITTL PCKHIYHKDC ISQWLKQNKV CCICKAEVYP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.