Factsheet for GSMUA_Achr4P30500_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G400200.1	Wheat	nucleus	40.71	54.55
TraesCS2B01G418300.1	Wheat	cytosol	40.41	54.15
Os04t0571200-01	Rice	nucleus	40.12	53.54
TraesCS2D01G397800.1	Wheat	cytosol	40.12	52.92
EES11283	Sorghum	nucleus	38.35	52.63
HORVU2Hr1G094980.4	Barley	cytosol	41.0	52.45
GSMUA_Achr4P03550_001	Banana	mitochondrion	8.26	46.67
Solyc03g026150.2.1	Tomato	nucleus	26.84	38.4
Zm00001d002624_P003	Maize	cytosol	37.17	37.5
PGSC0003DMT400037132	Potato	nucleus	26.25	37.24
VIT_12s0028g01220.t01	Wine grape	nucleus	23.01	35.62
GSMUA_AchrUn_...	Banana	nucleus	10.91	33.04
GSMUA_Achr8P31290_001	Banana	nucleus	24.19	32.41
GSMUA_Achr4P13930_001	Banana	nucleus	22.42	30.65
GSMUA_Achr4P03540_001	Banana	nucleus	16.22	27.92
CDX91624	Canola	nucleus	16.81	25.91
GSMUA_Achr4P06090_001	Banana	cytosol	11.21	25.85
GSMUA_Achr4P05140_001	Banana	nucleus	22.42	25.68
CDY27083	Canola	nucleus	16.52	25.57
AT5G52150.1	Thale cress	cytosol, nucleus, peroxisome	15.04	25.5
GSMUA_Achr3P26700_001	Banana	nucleus	21.24	24.66
GSMUA_Achr4P04290_001	Banana	nucleus	15.93	24.32
Bra022579.1-P	Field mustard	cytosol	9.14	23.48
CDY00512	Canola	nucleus	18.88	23.44
AT5G52140.1	Thale cress	nucleus	19.17	23.21
CDY31919	Canola	nucleus	18.29	22.71
GSMUA_Achr9P24150_001	Banana	nucleus	20.06	22.59
AT5G52155.1	Thale cress	nucleus	11.8	21.98
GSMUA_Achr4P04180_001	Banana	mitochondrion, nucleus, peroxisome, plastid	18.29	20.2
CDX91625	Canola	cytosol	12.68	18.78
Bra028293.1-P	Field mustard	nucleus	12.68	17.99
Bra022580.1-P	Field mustard	cytosol	9.44	17.78
GSMUA_AchrUn_...	Banana	nucleus	11.21	16.89
CDY27082	Canola	cytosol	11.8	16.81
GSMUA_Achr9P21480_001	Banana	plastid	13.86	13.82
GSMUA_Achr4P11130_001	Banana	nucleus, plastid	12.98	13.17
GSMUA_Achr1P23200_001	Banana	nucleus	11.8	11.11
GSMUA_Achr6P03840_001	Banana	nucleus	11.8	10.78
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	16.22	10.74
GSMUA_Achr3P29390_001	Banana	golgi, plastid	11.8	10.53
GSMUA_Achr1P23500_001	Banana	nucleus	15.93	10.51
GSMUA_Achr10P...	Banana	nucleus	15.34	10.28
GSMUA_Achr5P08460_001	Banana	nucleus	16.81	9.93
GSMUA_Achr3P13740_001	Banana	nucleus	14.16	9.8
GSMUA_Achr7P15850_001	Banana	nucleus	17.4	9.08
GSMUA_Achr4P12850_001	Banana	nucleus	11.5	8.55
GSMUA_Achr3P05160_001	Banana	nucleus	13.57	7.81
GSMUA_Achr9P11290_001	Banana	nucleus	14.16	6.89
GSMUA_Achr8P15680_001	Banana	nucleus	13.86	6.53
GSMUA_Achr9P22530_001	Banana	nucleus	12.39	6.52
GSMUA_Achr4P06080_001	Banana	nucleus	8.55	6.26

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:BB	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0040007	GO:GO:0046621	EnsemblPlantsGene:GSMUA_Achr4G30500_001	EnsemblPlants:GSMUA_Achr4P30500_001	EnsemblPlants:GSMUA_Achr4T30500_001
InterPro:IPR001841	InterPro:IPR013083	UniProt:M0STG2	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155
PANTHER:PTHR14155:SF75	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002961664	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

zinc RING finger protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G30500_001]

Coordinates

chr4:+:28054749..28061694

Molecular Weight (calculated)

37408.4 Da

IEP (calculated)

5.640

GRAVY (calculated)

-0.608

Length

339 amino acids

Sequence
(BLAST)

001: MTSTGTTRYC DRRTDSTSPS KRSKAAPFPT VSYSFKGAFV GCGCGSREDG KVHSVSVRVY GDLPTSFDRS AVSSGGRVGG LPVVMAMEFD TKEKKQVNVH
101: YMNIPVPYVV EENFGGYLHS YDDVAWAEEL QNQESMYRSF QRNVHSDISE DSSSASSRLH NGHNKSMGES NSSGTARFES QLANDEAFAR ELQELENQLA
201: DTSLGEITKI EANITPAQSS TANVEHNSAS PSSQVAREDD IDPDSMSYEE LQQLGETIGA ESRGLSDELI SLLQSSTYKT GLFSRKDKSE KCVICCMAYK
301: NRDKLIKLPC QHQYHKVCIT KWLKINKACP VCSEEVFGS

Best Arabidopsis Sequence Match ( AT3G63530.1 )
(BLAST)

001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH

Arabidopsis Description

BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.