Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr4P13930_001 | Banana | nucleus | 75.63 | 60.08 |
GSMUA_Achr8P31290_001 | Banana | nucleus | 58.88 | 45.85 |
KRH29702 | Soybean | nucleus | 46.19 | 36.69 |
KRH24699 | Soybean | nucleus | 45.69 | 36.29 |
PGSC0003DMT400082375 | Potato | nucleus | 44.16 | 35.37 |
VIT_06s0004g01930.t01 | Wine grape | nucleus | 45.18 | 35.32 |
Solyc11g062260.1.1 | Tomato | nucleus | 43.15 | 34.55 |
GSMUA_AchrUn_... | Banana | nucleus | 11.17 | 19.64 |
GSMUA_Achr3P26700_001 | Banana | nucleus | 27.41 | 18.49 |
GSMUA_Achr4P05140_001 | Banana | nucleus | 26.4 | 17.57 |
GSMUA_Achr4P06090_001 | Banana | cytosol | 12.18 | 16.33 |
GSMUA_Achr4P30500_001 | Banana | nucleus | 27.92 | 16.22 |
GSMUA_Achr9P24150_001 | Banana | nucleus | 22.84 | 14.95 |
GSMUA_Achr4P04290_001 | Banana | nucleus | 16.75 | 14.86 |
GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 21.32 | 13.68 |
GSMUA_AchrUn_... | Banana | nucleus | 12.69 | 11.11 |
GSMUA_Achr9P21480_001 | Banana | plastid | 14.21 | 8.24 |
GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 13.2 | 7.78 |
GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 19.8 | 7.62 |
GSMUA_Achr1P23200_001 | Banana | nucleus | 13.71 | 7.5 |
GSMUA_Achr3P13740_001 | Banana | nucleus | 16.24 | 6.53 |
GSMUA_Achr6P03840_001 | Banana | nucleus | 12.18 | 6.47 |
GSMUA_Achr5P08460_001 | Banana | nucleus | 18.78 | 6.45 |
GSMUA_Achr1P23500_001 | Banana | nucleus | 16.75 | 6.42 |
GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 12.18 | 6.32 |
GSMUA_Achr4P12850_001 | Banana | nucleus | 13.71 | 5.92 |
GSMUA_Achr9P11290_001 | Banana | nucleus | 20.3 | 5.74 |
GSMUA_Achr3P05160_001 | Banana | nucleus | 16.24 | 5.43 |
GSMUA_Achr4P06080_001 | Banana | nucleus | 12.18 | 5.18 |
GSMUA_Achr10P... | Banana | nucleus | 13.2 | 5.14 |
GSMUA_Achr9P22530_001 | Banana | nucleus | 15.74 | 4.81 |
GSMUA_Achr8P15680_001 | Banana | nucleus | 17.26 | 4.72 |
GSMUA_Achr7P15850_001 | Banana | nucleus | 14.72 | 4.46 |
GSMUA_Achr4P03550_001 | Banana | mitochondrion | 1.02 | 3.33 |
Protein Annotations
EnsemblPlants:GSMUA_Achr4P03540_001 | EnsemblPlants:GSMUA_Achr4T03540_001 | EnsemblPlantsGene:GSMUA_Achr4G03540_001 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF170 | SEG:seg |
UniParc:UPI0002958DF0 | UniProt:M0SKS1 | MapMan:35.1 | : | : | : |
Description
Putative E3 ubiquitin ligase BIG BROTHER [Source:GMGC_GENE;Acc:GSMUA_Achr4G03540_001]
Coordinates
chr4:+:2814232..2818906
Molecular Weight (calculated)
22804.2 Da
IEP (calculated)
6.225
GRAVY (calculated)
-0.945
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGNRQMEVH YINTGFPYTV TESFMDLFEG LTYAQADTAL AEVLHDQGNT YWSMMYANPY KYEFSGSSTN SYYDFGHTYE INDHTQRLDE GRRAWHNPTV
101: LNNIDLPQQA QHGNEVHHAS RNPGAEERTR VHRNSSGSQV IWHDNIDPDN MTYEELLELG EAIGTHSRGL TQERIASLPV KKYKCSLFSK KKTRHER
101: LNNIDLPQQA QHGNEVHHAS RNPGAEERTR VHRNSSGSQV IWHDNIDPDN MTYEELLELG EAIGTHSRGL TQERIASLPV KKYKCSLFSK KKTRHER
001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
Arabidopsis Description
BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.