Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- mitochondrion 5
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P13930_001 | Banana | nucleus | 63.33 | 15.32 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.33 | 15.18 |
| GSMUA_Achr8P31290_001 | Banana | nucleus | 63.33 | 15.02 |
| PGSC0003DMT400082375 | Potato | nucleus | 58.33 | 14.23 |
| VIT_06s0004g01930.t01 | Wine grape | nucleus | 58.33 | 13.89 |
| KRH29702 | Soybean | nucleus | 56.67 | 13.71 |
| Solyc11g062260.1.1 | Tomato | nucleus | 55.0 | 13.41 |
| KRH24699 | Soybean | nucleus | 55.0 | 13.31 |
| GSMUA_Achr4P06090_001 | Banana | cytosol | 28.33 | 11.56 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.0 | 9.33 |
| GSMUA_Achr4P05140_001 | Banana | nucleus | 45.0 | 9.12 |
| GSMUA_Achr3P26700_001 | Banana | nucleus | 43.33 | 8.9 |
| GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 45.0 | 8.79 |
| GSMUA_Achr9P24150_001 | Banana | nucleus | 41.67 | 8.31 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 46.67 | 8.26 |
| GSMUA_Achr4P04290_001 | Banana | nucleus | 30.0 | 8.11 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 36.67 | 6.59 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 33.33 | 5.88 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 31.67 | 5.28 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 33.33 | 5.26 |
| GSMUA_Achr6P03840_001 | Banana | nucleus | 31.67 | 5.12 |
| GSMUA_Achr10P... | Banana | nucleus | 33.33 | 3.95 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 33.33 | 3.91 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 33.33 | 3.89 |
| GSMUA_Achr5P08460_001 | Banana | nucleus | 36.67 | 3.83 |
| GSMUA_Achr4P12850_001 | Banana | nucleus | 28.33 | 3.73 |
| GSMUA_Achr3P05160_001 | Banana | nucleus | 35.0 | 3.57 |
| GSMUA_Achr3P13740_001 | Banana | nucleus | 28.33 | 3.47 |
| GSMUA_Achr7P15850_001 | Banana | nucleus | 35.0 | 3.23 |
| GSMUA_Achr9P11290_001 | Banana | nucleus | 35.0 | 3.01 |
| GSMUA_Achr9P22530_001 | Banana | nucleus | 28.33 | 2.64 |
| GSMUA_Achr8P15680_001 | Banana | nucleus | 31.67 | 2.64 |
| GSMUA_Achr4P06080_001 | Banana | nucleus | 10.0 | 1.3 |
| GSMUA_Achr4P03540_001 | Banana | nucleus | 3.33 | 1.02 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P03550_001 | EnsemblPlants:GSMUA_Achr4T03550_001 | EnsemblPlantsGene:GSMUA_Achr4G03550_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF170 | PFAM:PF13639 | PFscan:PS50089 |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002955A5B | UniProt:M0SKS2 | MapMan:35.1 | : |
Description
E3 ubiquitin ligase BIG BROTHER [Source:GMGC_GENE;Acc:GSMUA_Achr4G03550_001]
Coordinates
chr4:+:2825829..2826277
Molecular Weight (calculated)
6940.7 Da
IEP (calculated)
8.868
GRAVY (calculated)
-0.035
Length
60 amino acids
Sequence
(BLAST)
(BLAST)
1: MISLSGSRCV ICQMKYRRGD RQMILPCKHS YHSVCVTRWL NINKACPICF VEVPAEELKP
001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
Arabidopsis Description
BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.