Factsheet for GSMUA_Achr1P23500_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	31.32	71.56
GSMUA_Achr4P06090_001	Banana	cytosol	12.26	42.86
GSMUA_AchrUn_...	Banana	nucleus	9.14	41.96
CDX97032	Canola	plastid	24.9	38.21
CDY71882	Canola	plastid	25.29	37.14
CDX85750	Canola	nucleus	26.26	34.97
GSMUA_Achr4P03550_001	Banana	mitochondrion	3.89	33.33
Bra024009.1-P	Field mustard	nucleus	11.28	33.14
GSMUA_Achr6P03840_001	Banana	nucleus	23.74	32.88
VIT_04s0008g02390.t01	Wine grape	nucleus	34.82	32.55
CDY40109	Canola	nucleus	11.67	32.26
CDY13429	Canola	cytosol	15.76	31.4
CDY68658	Canola	nucleus	28.4	31.13
CDX97044	Canola	nucleus	30.74	30.98
CDX95473	Canola	nucleus	27.82	30.82
AT5G24870.2	Thale cress	nucleus	31.13	30.77
CDX88140	Canola	nucleus	28.79	30.71
KRH04957	Soybean	nucleus	31.52	30.45
CDX78393	Canola	nucleus	29.18	30.36
KRH52597	Soybean	nucleus	31.91	30.31
Bra006070.1-P	Field mustard	nucleus	28.99	30.1
KRH16134	Soybean	nucleus	32.49	30.09
CDX70363	Canola	nucleus	28.21	29.84
Bra009015.1-P	Field mustard	plastid	30.16	29.08
CDX69813	Canola	mitochondrion	29.96	28.89
PGSC0003DMT400067670	Potato	nucleus	29.57	28.79
Solyc08g006460.2.1	Tomato	nucleus	29.18	28.25
AT5G10650.2	Thale cress	nucleus	28.6	28.0
PGSC0003DMT400075959	Potato	nucleus	29.57	27.89
Solyc12g096420.1.1	Tomato	nucleus	29.77	27.77
GSMUA_Achr3P05160_001	Banana	nucleus	30.74	26.83
GSMUA_Achr10P...	Banana	nucleus	25.88	26.28
KRH61936	Soybean	nucleus	28.02	25.85
Bra009800.1-P	Field mustard	nucleus	18.68	23.41
GSMUA_Achr7P15850_001	Banana	nucleus	28.21	22.31
GSMUA_Achr4P13930_001	Banana	nucleus	10.31	21.37
GSMUA_Achr8P31290_001	Banana	nucleus	10.31	20.95
CDY63645	Canola	nucleus	18.68	20.78
GSMUA_Achr9P21480_001	Banana	plastid	13.62	20.59
Bra024007.1-P	Field mustard	nucleus	18.68	20.56
CDY13433	Canola	nucleus	18.48	20.39
GSMUA_Achr1P23200_001	Banana	nucleus	14.2	20.28
GSMUA_Achr4P11130_001	Banana	nucleus, plastid	13.04	20.06
AT4G31450.2	Thale cress	nucleus	18.68	19.32
GSMUA_Achr3P29390_001	Banana	golgi, plastid	13.23	17.89
GSMUA_Achr4P12850_001	Banana	nucleus	15.37	17.32
GSMUA_Achr4P03540_001	Banana	nucleus	6.42	16.75
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	16.54	16.6
GSMUA_Achr9P24150_001	Banana	nucleus	9.53	16.28
GSMUA_Achr4P30500_001	Banana	nucleus	10.51	15.93
GSMUA_Achr4P04290_001	Banana	nucleus	6.81	15.77
GSMUA_Achr3P13740_001	Banana	nucleus	14.98	15.71
GSMUA_Achr4P05140_001	Banana	nucleus	8.75	15.2
GSMUA_Achr3P26700_001	Banana	nucleus	8.56	15.07
GSMUA_Achr4P04180_001	Banana	mitochondrion, nucleus, peroxisome, plastid	8.56	14.33
GSMUA_Achr9P11290_001	Banana	nucleus	18.87	13.92
GSMUA_Achr8P15680_001	Banana	nucleus	18.68	13.33
GSMUA_Achr9P22530_001	Banana	nucleus	16.34	13.04
GSMUA_Achr5P08460_001	Banana	nucleus	14.4	12.89
GSMUA_Achr4P06080_001	Banana	nucleus	9.92	11.02

Protein Annotations

EnsemblPlants:GSMUA_Achr1P23500_001	EnsemblPlants:GSMUA_Achr1T23500_001	EnsemblPlantsGene:GSMUA_Achr1G23500_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF53	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002948B6E	UniProt:M0S2F7	MapMan:35.1

Description

Ring finger protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr1G23500_001]

Coordinates

chr1:-:17856166..17862655

Molecular Weight (calculated)

56389.9 Da

IEP (calculated)

8.482

GRAVY (calculated)

-0.657

Length

514 amino acids

Sequence
(BLAST)

001: MGRIQRLGSG LDSFPAVSSL SPWNDFVWSL PQRGLSRQTK GDLCSGMDCS MGRRTASGII FSKSGCSITF REQNHHARSI RSCSRLGCGA NFYSMKGTKV
101: GEQDKAPFHT GSSKLLPASS FRRPQRGGRT RRSPEEADVA ESSNSQRESD KIKCTSRSLD IKDSDSRRGL GKKEDSHSTT GEEESCSNKL RSKTSKEVTR
201: QSRYHYKDNL STFASTSMAH AYGLENPTRA GVSNVRPSGF NSPNSGSSRT ANNIRKRSLY KASPSSSGKS MIPSSSGTNS GLDVPRRAPR RSRNQSPNGV
301: RGVPQSSSRL STDFNPLCHN VHGQPGSSTR IAPIGQIHEP VASSTHTFDA SLEDRDGYPH LVMEEVAELL LALERIEDEG LTYEQLSLLG NHLFLDSLSF
401: NDQYRDMRMD IDNMSYEELL VLEEKIGTVS TALTEEALSR CLKRSNYMPA SLISGFSGLD EAGAKCSICQ EEFVVGDELG ELACEHAYHV KCIHQWLGLK
501: NWCPICKASV SPTS

Best Arabidopsis Sequence Match ( AT4G31450.1 )
(BLAST)

001: MDRWSSKRAM EARPDSKKKG GVVFRDRFNS NSCKVPICSD EKKSMNFTRF VGSSDKKEKS VLSTYRSSPN GKEVIGTSSK ICISSSSSVK SGEKQPFSQI
101: AIDSSESSRG SEDEVESEIL QVPLGRDKRR MNNKLIYGKV ITPEAECSKL PSSSRIKRGF RQRFGLSKQE FHPGPSGQST SANRGCSPLL SGVIPSGFGL
201: DKRLSRKADT ISKTKVYGES SSSSSARGKN VTEPPPVEVR RRSFNPRGSV SDSRRARHCI LDDDNDVASV GSQRLANRNN SRIRGSGRDG LSSVTAAEMS
301: QTETSNNLNS PVSLELFSGF PEFGLSGSLL SHDSFRSYNL DGISEILPEL DRIEQDIELN YEDLLIMETG LLLGGLSFHD QHRDMRLDID NMSYEELLAL
401: EERIGTVSTA LTEEAISKCL KTSIYQMKPL SYGSITKSPS DNKEDAKCSI CQEEYTIGDE VGRLHCEHTY HVKCVQEWLR IKSWCPICKA TAETSSK

Arabidopsis Description

At4g31450/F3L17_20 [Source:UniProtKB/TrEMBL;Acc:Q944Q9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.