Factsheet for GSMUA_Achr9P11290_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079217	Potato	cytosol	10.19	71.72
GSMUA_Achr8P15680_001	Banana	nucleus	73.46	71.11
GSMUA_Achr4P06090_001	Banana	cytosol	12.77	60.54
GSMUA_AchrUn_...	Banana	nucleus	7.75	48.21
GSMUA_Achr4P12850_001	Banana	nucleus	22.96	35.09
GSMUA_Achr4P03550_001	Banana	mitochondrion	3.01	35.0
GSMUA_AchrUn_...	Banana	nucleus	10.33	32.0
GSMUA_Achr9P22530_001	Banana	nucleus	29.56	31.99
Bra015221.1-P	Field mustard	nucleus	26.4	30.82
Solyc01g107940.2.1	Tomato	nucleus	30.85	30.41
Solyc01g107930.2.1	Tomato	nucleus	30.7	29.8
AT4G34040.1	Thale cress	nucleus	28.26	29.58
PGSC0003DMT400066252	Potato	nucleus	30.27	29.51
Bra039842.1-P	Field mustard	nucleus	25.25	29.48
CDY37230	Canola	nucleus	24.82	29.37
CDY62314	Canola	nucleus	24.82	29.22
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	29.7	28.51
AT2G15530.4	Thale cress	nucleus	28.84	25.77
GSMUA_Achr4P11130_001	Banana	nucleus, plastid	12.05	25.15
GSMUA_Achr9P21480_001	Banana	plastid	11.91	24.41
GSMUA_Achr4P13930_001	Banana	nucleus	8.46	23.79
GSMUA_Achr3P13740_001	Banana	nucleus	16.64	23.67
GSMUA_Achr8P31290_001	Banana	nucleus	8.32	22.92
GSMUA_Achr1P23200_001	Banana	nucleus	11.76	22.78
GSMUA_Achr6P03840_001	Banana	nucleus	11.91	22.37
GSMUA_Achr3P29390_001	Banana	golgi, plastid	12.05	22.11
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	15.93	21.68
GSMUA_Achr4P03540_001	Banana	nucleus	5.74	20.3
GSMUA_Achr3P26700_001	Banana	nucleus	8.46	20.21
GSMUA_Achr4P05140_001	Banana	nucleus	8.46	19.93
GSMUA_Achr10P...	Banana	nucleus	14.35	19.76
GSMUA_Achr1P23500_001	Banana	nucleus	13.92	18.87
GSMUA_Achr5P08460_001	Banana	nucleus	15.06	18.29
GSMUA_Achr4P04290_001	Banana	nucleus	5.74	18.02
GSMUA_Achr7P15850_001	Banana	nucleus	16.64	17.85
GSMUA_Achr4P04180_001	Banana	mitochondrion, nucleus, peroxisome, plastid	7.6	17.26
GSMUA_Achr3P05160_001	Banana	nucleus	14.49	17.15
GSMUA_Achr4P06080_001	Banana	nucleus	10.47	15.77
GSMUA_Achr9P24150_001	Banana	nucleus	6.6	15.28
GSMUA_Achr4P30500_001	Banana	nucleus	6.89	14.16

Protein Annotations

EnsemblPlants:GSMUA_Achr9P11290_001	EnsemblPlants:GSMUA_Achr9T11290_001	EnsemblPlantsGene:GSMUA_Achr9G11290_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR14155	PANTHER:PTHR14155:SF464	PFAM:PF13639
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000294B6E2	UniProt:M0TZD8
MapMan:35.1	:	:	:	:	:

Description

Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G11290_001]

Coordinates

chr9:+:7331334..7337609

Molecular Weight (calculated)

76238.3 Da

IEP (calculated)

6.256

GRAVY (calculated)

-0.542

Length

697 amino acids

Sequence
(BLAST)

001: MQGQRNFVQP LHESFELDCE SNSSSSGMNQ QVLWNNMLFN PVEIQSMTDC AVSSDGVNIP CLNMANQDGT QLGNWSLGGS SSSQHSQIQG GHEENKLEHE
101: WTPPATVASR GGPRLQENHF EASHALSLEN VNISHSTTQT DGIQTFPQNY SCFNNRHQNV EHVAVQVGIG NELSEPRLSH HPYLLGFLDP ETVPSSIGLS
201: NPGESSSEGV GFLREDDERA ESSFDGRRLS CKRKNSDGFP GQSSASGNAS SSHQSENSLL HSRSYNPMTG LNISSSSGYP SVGHSIEEHT AGFGTFVGGM
301: AFDCYPSASA AGNVESLRRN YRLRINRAQP HDVSLRNSWS ASSVGQSDIW SPNQPPSRSI SLNHFLEPAS LLTTSSSASQ THIPVVPALP QIVNSFPWNR
401: ASSSRIGSSS GPFSSEDRSI TAREGNDLRN MPVTSNLDLV PATDVRNMTQ GQANWSLSSG SISMVPSSQA VTNSGLHPTF GSSWGTNFAL QHSAHPLSSQ
501: EVAQQIRTRL HGPHPTSHIR STTHLLRRRN DGLFSAPLPM RSLTAAGEER SRMLSEIRHA LESLRHGDGL RFEDVFILDQ TLILAGSDLH DRHRDMRLDV
601: DNMSYEELLA LEERIGNVCT GLSEETILKS LKQQKHSSAA IRASMEHKPC CICQEEYVEG DDLGTLDCGH DFHSVCIKQW LMHKNLCPIC KNTALIT

Best Arabidopsis Sequence Match ( AT2G15530.5 )
(BLAST)

001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.