Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 11.84 | 51.79 |
| GSMUA_Achr4P06090_001 | Banana | cytosol | 13.88 | 46.26 |
| GSMUA_Achr4P03550_001 | Banana | mitochondrion | 3.47 | 28.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 12.45 | 27.11 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 16.33 | 23.53 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 15.51 | 22.75 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 16.12 | 21.94 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 21.84 | 20.9 |
| GSMUA_Achr8P31290_001 | Banana | nucleus | 10.61 | 20.55 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 15.92 | 20.53 |
| GSMUA_Achr4P12850_001 | Banana | nucleus | 18.98 | 20.39 |
| GSMUA_Achr4P04290_001 | Banana | nucleus | 9.18 | 20.27 |
| GSMUA_Achr6P03840_001 | Banana | nucleus | 15.1 | 19.95 |
| GSMUA_Achr4P05140_001 | Banana | nucleus | 12.04 | 19.93 |
| GSMUA_Achr4P13930_001 | Banana | nucleus | 10.0 | 19.76 |
| GSMUA_Achr3P26700_001 | Banana | nucleus | 11.63 | 19.52 |
| GSMUA_Achr5P08460_001 | Banana | nucleus | 22.65 | 19.34 |
| GSMUA_Achr10P... | Banana | nucleus | 19.39 | 18.77 |
| GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 11.02 | 17.59 |
| GSMUA_Achr9P24150_001 | Banana | nucleus | 10.41 | 16.94 |
| GSMUA_Achr9P11290_001 | Banana | nucleus | 23.67 | 16.64 |
| GSMUA_Achr8P15680_001 | Banana | nucleus | 23.88 | 16.25 |
| GSMUA_Achr4P03540_001 | Banana | nucleus | 6.53 | 16.24 |
| GSMUA_Achr9P22530_001 | Banana | nucleus | 20.82 | 15.84 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 15.71 | 14.98 |
| GSMUA_Achr3P05160_001 | Banana | nucleus | 17.96 | 14.94 |
| GSMUA_Achr7P15850_001 | Banana | nucleus | 19.8 | 14.92 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 9.8 | 14.16 |
| GSMUA_Achr4P06080_001 | Banana | nucleus | 12.65 | 13.39 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P13740_001 | EnsemblPlants:GSMUA_Achr3T13740_001 | EnsemblPlantsGene:GSMUA_Achr3G13740_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF47 | PFAM:PF13639 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00029611E4 | UniProt:M0SEE1 | MapMan:35.1 |
Description
Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G13740_001]
Coordinates
chr3:-:12412427..12414587
Molecular Weight (calculated)
54616.5 Da
IEP (calculated)
6.466
GRAVY (calculated)
-0.679
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHNGIWNHP QHDPQLSSDN PTRAGDHPSS SSSSGFPISS AAIPGTSNSS HIDPECHESF GNFPPNQALN EPSCYEQPIR GDGYNTIYPQ MDYRRIAFKR
101: KSPVMPVIAD RANTTGHYQA GSSSNCPSYP TSLEPRVSPS PECWPLDTLN MPAGYRNDNN ITGERLQRNV RSRQTEDFQL NPAWFYDSRF MAYPFYSSCN
201: TSDPRMAQQW NQLSAPMVPQ GQLPTPGAFN HEVSRPTARA NANCGTTASN NAYLSHPNHN INRSVPLPAL QHPSIQGMVP AQSGHNRMVV PYSTISSYSG
301: TGMSIASDIE VPMGMDAAAP SRYMRPLSII GHTGHGERHS ARHAHRRSHL IFSQHTAYNR LAPEGILMTD WSAFYDSVSL LDQHRDMRLD IDNMSYEELL
401: ALEERIGNVS TGLSEETILR SMVEMVYHSN QIQEEGQCAI CLEEYKDKEK LGTLNCGHDF HVGCISQWLQ MKNVCPICKD SASGNTWKEQ
101: KSPVMPVIAD RANTTGHYQA GSSSNCPSYP TSLEPRVSPS PECWPLDTLN MPAGYRNDNN ITGERLQRNV RSRQTEDFQL NPAWFYDSRF MAYPFYSSCN
201: TSDPRMAQQW NQLSAPMVPQ GQLPTPGAFN HEVSRPTARA NANCGTTASN NAYLSHPNHN INRSVPLPAL QHPSIQGMVP AQSGHNRMVV PYSTISSYSG
301: TGMSIASDIE VPMGMDAAAP SRYMRPLSII GHTGHGERHS ARHAHRRSHL IFSQHTAYNR LAPEGILMTD WSAFYDSVSL LDQHRDMRLD IDNMSYEELL
401: ALEERIGNVS TGLSEETILR SMVEMVYHSN QIQEEGQCAI CLEEYKDKEK LGTLNCGHDF HVGCISQWLQ MKNVCPICKD SASGNTWKEQ
001: MQGERASLGY LSEALNFEHG SSSSNGVIDH WENIHSLGDN DLQDYMIANS ESNTSLANSV YHEQQGLRRF SLGEASSSGT KDEASSHNEQ RMETRCFDGR
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A
Arabidopsis Description
RHG1AProbable E3 ubiquitin-protein ligase RHG1A [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.