Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P03840_001 | Banana | nucleus | 47.63 | 64.96 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 10.08 | 55.43 |
| Zm00001d019616_P001 | Maize | cytosol | 14.03 | 55.04 |
| Zm00001d015453_P001 | Maize | cytosol | 14.03 | 55.04 |
| Zm00001d013776_P001 | Maize | cytosol | 13.83 | 54.26 |
| GSMUA_Achr7P15850_001 | Banana | nucleus | 63.83 | 49.69 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.54 | 48.44 |
| GSMUA_AchrUn_... | Banana | nucleus | 9.88 | 44.64 |
| GSMUA_Achr4P06090_001 | Banana | cytosol | 12.65 | 43.54 |
| GSMUA_Achr4P03550_001 | Banana | mitochondrion | 3.95 | 33.33 |
| GSMUA_Achr3P05160_001 | Banana | nucleus | 32.81 | 28.18 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 30.83 | 27.66 |
| Os06t0695600-01 | Rice | nucleus | 30.63 | 26.77 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 30.83 | 26.76 |
| TraesCS7B01G328500.1 | Wheat | nucleus | 30.24 | 26.47 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 29.84 | 26.35 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 30.24 | 26.11 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 26.28 | 25.88 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 30.83 | 25.87 |
| EES04530 | Sorghum | nucleus | 25.49 | 24.9 |
| Zm00001d015289_P001 | Maize | nucleus | 27.67 | 24.73 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 16.6 | 24.71 |
| Zm00001d014609_P002 | Maize | nucleus | 28.06 | 24.27 |
| KXG20741 | Sorghum | nucleus | 28.26 | 24.24 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 15.22 | 23.05 |
| TraesCS7A01G428300.2 | Wheat | nucleus | 26.09 | 22.72 |
| Os02t0150700-01 | Rice | extracellular | 28.66 | 22.62 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 30.43 | 22.16 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 14.82 | 20.83 |
| GSMUA_Achr8P31290_001 | Banana | nucleus | 10.28 | 20.55 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 15.02 | 20.0 |
| GSMUA_Achr3P13740_001 | Banana | nucleus | 18.77 | 19.39 |
| GSMUA_Achr4P12850_001 | Banana | nucleus | 17.19 | 19.08 |
| GSMUA_Achr4P13930_001 | Banana | nucleus | 9.09 | 18.55 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 18.58 | 18.36 |
| GSMUA_Achr4P04290_001 | Banana | nucleus | 7.71 | 17.57 |
| GSMUA_Achr4P05140_001 | Banana | nucleus | 9.49 | 16.22 |
| GSMUA_Achr9P24150_001 | Banana | nucleus | 9.49 | 15.95 |
| GSMUA_Achr3P26700_001 | Banana | nucleus | 8.89 | 15.41 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 10.28 | 15.34 |
| GSMUA_Achr9P22530_001 | Banana | nucleus | 19.37 | 15.22 |
| GSMUA_Achr5P08460_001 | Banana | nucleus | 16.8 | 14.81 |
| GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 8.89 | 14.66 |
| GSMUA_Achr9P11290_001 | Banana | nucleus | 19.76 | 14.35 |
| GSMUA_Achr8P15680_001 | Banana | nucleus | 20.16 | 14.17 |
| GSMUA_Achr4P03540_001 | Banana | nucleus | 5.14 | 13.2 |
| GSMUA_Achr4P06080_001 | Banana | nucleus | 10.47 | 11.45 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P23510_001 | EnsemblPlants:GSMUA_Achr10T23510_001 | EnsemblPlantsGene:GSMUA_Achr10G23510_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF99 | PFAM:PF13639 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002964089 | UniProt:M0RKS6 | MapMan:35.1 |
Description
Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G23510_001]
Coordinates
chr10:+:28232184..28235423
Molecular Weight (calculated)
56232.4 Da
IEP (calculated)
6.465
GRAVY (calculated)
-0.704
Length
506 amino acids
Sequence
(BLAST)
(BLAST)
001: MNCEAMEASS SRSSPISSGC GRSFREQKNK ELLRESTIAE SSTKQDESED LINIDKQVYV EILNSESQRR LEDSEGISVT TEHFKPSVLQ NISTNITESS
101: ISASVPKPHR RINRQFGTGK QDPSSSSFLH HPSVSHRNSS HAVKPISQRL SSGPETCSLK SLSCTSISDI LPSGCSSSDF THHKRADAVR KRPSGGDSSA
201: TRSKGASASS GGGYVVPMHT GAGSSSSSRD QSMHRPMSRT RNQPTIRDGP VSVRTHRGST EENQMRLSVQ GDDSTLLLHE PIMNPEYQWA QFSSPDTPPE
301: NASRSSPALY NLYGRPGSGN RASQSTLLSQ PEDNSTRMFY GSLRDRDVYR RFNMDGFAEV LLALERIEQV EALAHEQSLM LETSLLFGGL SFHDHHRDLR
401: MDIDNMSYEE LLALEEKMGT VSTALSEEQL SKCLERSIYE PTHLTTGITF CFDEDMKCSI CQEEYVGEDE IGKLSCEHRY HATCIAQWLR RKNWCPICKS
501: SVLPSQ
101: ISASVPKPHR RINRQFGTGK QDPSSSSFLH HPSVSHRNSS HAVKPISQRL SSGPETCSLK SLSCTSISDI LPSGCSSSDF THHKRADAVR KRPSGGDSSA
201: TRSKGASASS GGGYVVPMHT GAGSSSSSRD QSMHRPMSRT RNQPTIRDGP VSVRTHRGST EENQMRLSVQ GDDSTLLLHE PIMNPEYQWA QFSSPDTPPE
301: NASRSSPALY NLYGRPGSGN RASQSTLLSQ PEDNSTRMFY GSLRDRDVYR RFNMDGFAEV LLALERIEQV EALAHEQSLM LETSLLFGGL SFHDHHRDLR
401: MDIDNMSYEE LLALEEKMGT VSTALSEEQL SKCLERSIYE PTHLTTGITF CFDEDMKCSI CQEEYVGEDE IGKLSCEHRY HATCIAQWLR RKNWCPICKS
501: SVLPSQ
001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
Arabidopsis Description
At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.