Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G054920.1 | Barley | cytosol | 15.07 | 92.39 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 93.79 | 90.74 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 93.79 | 87.73 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 88.83 | 72.09 |
| Zm00001d019616_P001 | Maize | cytosol | 15.25 | 66.67 |
| Zm00001d015453_P001 | Maize | cytosol | 15.25 | 66.67 |
| Zm00001d013776_P001 | Maize | cytosol | 15.25 | 66.67 |
| EES04530 | Sorghum | nucleus | 50.89 | 55.41 |
| Os02t0150700-01 | Rice | extracellular | 61.88 | 54.45 |
| Zm00001d015289_P001 | Maize | nucleus | 53.37 | 53.18 |
| TraesCS7B01G328500.1 | Wheat | nucleus | 49.82 | 48.62 |
| CDX97032 | Canola | plastid | 25.18 | 42.39 |
| CDY71882 | Canola | plastid | 25.35 | 40.86 |
| GSMUA_Achr3P05160_001 | Banana | nucleus | 42.38 | 40.58 |
| GSMUA_Achr6P03840_001 | Banana | nucleus | 25.53 | 38.81 |
| CDX85750 | Canola | nucleus | 25.18 | 36.79 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 34.4 | 35.27 |
| CDX95473 | Canola | nucleus | 28.19 | 34.27 |
| CDY40109 | Canola | nucleus | 11.17 | 33.87 |
| KRH04957 | Soybean | nucleus | 31.91 | 33.83 |
| AT5G24870.2 | Thale cress | nucleus | 31.03 | 33.65 |
| CDX88140 | Canola | nucleus | 28.55 | 33.4 |
| CDY68658 | Canola | nucleus | 27.66 | 33.26 |
| KRH52597 | Soybean | nucleus | 31.56 | 32.9 |
| Bra006070.1-P | Field mustard | nucleus | 28.72 | 32.73 |
| KRH16134 | Soybean | nucleus | 32.09 | 32.61 |
| CDX78393 | Canola | nucleus | 28.37 | 32.39 |
| Bra024009.1-P | Field mustard | nucleus | 9.93 | 32.0 |
| CDX97044 | Canola | nucleus | 28.9 | 31.96 |
| CDX70363 | Canola | nucleus | 27.3 | 31.69 |
| PGSC0003DMT400067670 | Potato | nucleus | 29.08 | 31.06 |
| GSMUA_Achr10P... | Banana | nucleus | 27.66 | 30.83 |
| Solyc08g006460.2.1 | Tomato | nucleus | 28.9 | 30.7 |
| CDX69813 | Canola | mitochondrion | 28.9 | 30.58 |
| Bra009015.1-P | Field mustard | plastid | 28.72 | 30.39 |
| AT5G10650.2 | Thale cress | nucleus | 27.48 | 29.52 |
| CDY13429 | Canola | cytosol | 13.48 | 29.46 |
| PGSC0003DMT400075959 | Potato | nucleus | 28.37 | 29.36 |
| Solyc12g096420.1.1 | Tomato | nucleus | 28.37 | 29.04 |
| KRH61936 | Soybean | nucleus | 28.01 | 28.37 |
| TraesCS5B01G279200.1 | Wheat | cytosol | 5.67 | 26.23 |
| Bra009800.1-P | Field mustard | nucleus | 18.79 | 25.85 |
| TraesCS2B01G456100.1 | Wheat | nucleus | 17.02 | 25.74 |
| GSMUA_Achr7P15850_001 | Banana | nucleus | 29.43 | 25.54 |
| TraesCS3B01G293600.1 | Wheat | nucleus | 14.89 | 24.49 |
| TraesCS5B01G313800.1 | Wheat | cytosol, nucleus, plastid | 7.27 | 23.98 |
| TraesCS1B01G393400.2 | Wheat | nucleus | 13.65 | 22.13 |
| CDY63645 | Canola | nucleus | 15.6 | 19.05 |
| Bra024007.1-P | Field mustard | nucleus | 15.6 | 18.84 |
| CDY13433 | Canola | nucleus | 15.43 | 18.67 |
| AT4G31450.2 | Thale cress | nucleus | 15.96 | 18.11 |
| TraesCS2B01G418300.1 | Wheat | cytosol | 7.98 | 17.79 |
| TraesCS7B01G170500.1 | Wheat | cytosol, mitochondrion, nucleus | 9.22 | 17.39 |
| TraesCS4B01G191300.1 | Wheat | nucleus | 7.98 | 17.18 |
| TraesCS2B01G542200.2 | Wheat | nucleus | 19.5 | 16.42 |
| TraesCS2B01G030700.1 | Wheat | nucleus | 20.39 | 16.41 |
| TraesCS3B01G272400.4 | Wheat | nucleus | 14.36 | 15.34 |
| TraesCS5B01G325800.1 | Wheat | mitochondrion | 10.11 | 15.08 |
| TraesCS1B01G129600.1 | Wheat | nucleus | 14.18 | 14.98 |
| TraesCS3B01G120600.2 | Wheat | cytosol | 13.48 | 14.67 |
| TraesCS1B01G426200.9 | Wheat | cytosol | 13.65 | 14.05 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G149700.2 | EnsemblPlantsGene:TraesCS6B01G149700 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF60 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr6B:+:150833616..150836312
Molecular Weight (calculated)
63211.9 Da
IEP (calculated)
8.879
GRAVY (calculated)
-0.762
Length
564 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEYLSRRSK TAMGFLRRGS GINRSPEETT SQNTDVQGST SRVNPMKTRL ADNQERPRYL HGSYKYASSN VMSGSSSKFP KNFPLRKFGE EKRRQTLFDG
101: ADVAESSRRK SDARYLEGSK KLVIENQSSH APQTETERLT AKDDELIAPD PEVSHSAGFS GMHARTAESL VRSASLSSCS SFSNQPSIPR IPIAGVKPSN
201: SLVSGEQRRG PRGLKNLSCT SVSDVLPSGC SSDSVRTSSF DAMRKRTSDG ESSSRSRVIC DPSSLGHSHT IYPSISGPRI RTTEESVRQQ TLRSRSRNIQ
301: DSAVSVRTRR TSPRDTRFRL SEEREDAMFH LNESTAGNQQ SVGADFSVEE DSSESSIRPV SVELPHAIYS SSRQGSSTRT ARRTSSSRFE QSPPQTFRSL
401: ARERGGHRRI NMEGIAEVLL VLERIEQEAE LTYEQQLRVL ETNLLLGAFA SHDQHSDMRM DIDNMSYEEL LALEERIGYV STALSEEQFA KCIRRRLYRP
501: VAAKGNRSVI DDIKCSICQE EFVKSEEVGR LPCEHQYHVC CIRQWLLQKN WCPVCKTPAL PSLN
101: ADVAESSRRK SDARYLEGSK KLVIENQSSH APQTETERLT AKDDELIAPD PEVSHSAGFS GMHARTAESL VRSASLSSCS SFSNQPSIPR IPIAGVKPSN
201: SLVSGEQRRG PRGLKNLSCT SVSDVLPSGC SSDSVRTSSF DAMRKRTSDG ESSSRSRVIC DPSSLGHSHT IYPSISGPRI RTTEESVRQQ TLRSRSRNIQ
301: DSAVSVRTRR TSPRDTRFRL SEEREDAMFH LNESTAGNQQ SVGADFSVEE DSSESSIRPV SVELPHAIYS SSRQGSSTRT ARRTSSSRFE QSPPQTFRSL
401: ARERGGHRRI NMEGIAEVLL VLERIEQEAE LTYEQQLRVL ETNLLLGAFA SHDQHSDMRM DIDNMSYEEL LALEERIGYV STALSEEQFA KCIRRRLYRP
501: VAAKGNRSVI DDIKCSICQE EFVKSEEVGR LPCEHQYHVC CIRQWLLQKN WCPVCKTPAL PSLN
001: MDGCAGKRSV DRLVVPRKAS GLTLRENMNK TDGKNVPFCS RVGCTAKVTS TKRSRIGSTD NNTKVGLPPV PSTLNRKEIV GSSSRTPGGF GYLRKPAKVT
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
Arabidopsis Description
At5g10650 [Source:UniProtKB/TrEMBL;Acc:Q5XEP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.