Factsheet for TraesCS1B01G426200.9

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G405800.9	Wheat	cytosol	89.78	93.89
TraesCS1A01G398300.8	Wheat	cytosol	91.42	92.95
HORVU1Hr1G087900.1	Barley	cytosol	83.03	87.5
Os05t0564300-01	Rice	nucleus	50.55	55.4
KXG22536	Sorghum	nucleus	47.63	51.38
Zm00001d009571_P002	Maize	nucleus	46.72	50.0
Zm00001d039015_P002	Maize	cytosol	36.31	48.66
TraesCS3B01G272400.4	Wheat	nucleus	40.33	41.86
TraesCS5B01G279200.1	Wheat	cytosol	4.93	22.13
TraesCS3B01G293600.1	Wheat	nucleus	13.69	21.87
TraesCS4B01G191300.1	Wheat	nucleus	10.22	21.37
TraesCS5B01G313800.1	Wheat	cytosol, nucleus, plastid	6.57	21.05
TraesCS1B01G393400.2	Wheat	nucleus	13.14	20.69
VIT_19s0014g01850.t01	Wine grape	nucleus	19.89	20.26
CDY24110	Canola	nucleus	16.97	20.22
Bra039659.1-P	Field mustard	nucleus	16.97	20.22
CDY26006	Canola	nucleus	16.97	20.13
Solyc12g014070.1.1	Tomato	nucleus	19.34	19.81
PGSC0003DMT400039631	Potato	nucleus	19.34	19.78
CDY25871	Canola	nucleus	16.79	19.25
AT1G53190.1	Thale cress	nucleus	17.34	19.23
Bra038109.1-P	Field mustard	nucleus	16.79	19.17
CDY55839	Canola	nucleus	16.79	18.81
KRH30071	Soybean	cytosol	11.68	18.6
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	13.32	18.58
TraesCS2B01G456100.1	Wheat	nucleus	12.59	18.5
KRH22017	Soybean	nucleus	17.7	18.37
KRH26195	Soybean	nucleus	15.33	18.34
KRH55161	Soybean	nucleus	15.15	18.12
PGSC0003DMT400054921	Potato	nucleus	17.15	18.11
CDX82450	Canola	nucleus	14.78	18.08
Bra001582.1-P	Field mustard	nucleus	14.42	18.08
CDX75805	Canola	cytosol	14.6	18.06
VIT_03s0097g00680.t01	Wine grape	nucleus	13.87	18.05
KRH55165	Soybean	nucleus	10.22	18.01
VIT_03s0088g01090.t01	Wine grape	nucleus	14.96	17.94
CDY68521	Canola	nucleus	14.42	17.91
Solyc10g007140.2.1	Tomato	nucleus	16.79	17.73
AT3G15070.1	Thale cress	nucleus	15.69	17.7
TraesCS2B01G418300.1	Wheat	cytosol	8.03	17.39
TraesCS1B01G129600.1	Wheat	nucleus	16.79	17.23
Bra027282.1-P	Field mustard	nucleus	13.87	17.08
CDX97629	Canola	nucleus	13.32	16.55
KRH55090	Soybean	nucleus	11.13	16.4
TraesCS7B01G170500.1	Wheat	cytosol, mitochondrion, nucleus	8.76	16.05
TraesCS3B01G120600.2	Wheat	cytosol	14.78	15.64
TraesCS7B01G328500.1	Wheat	nucleus	15.69	14.88
TraesCS6B01G149700.2	Wheat	nucleus	14.05	13.65
TraesCS2B01G542200.2	Wheat	nucleus	16.42	13.43
Solyc07g062720.1.1	Tomato	nucleus	18.07	12.77
TraesCS5B01G325800.1	Wheat	mitochondrion	8.58	12.43
TraesCS2B01G030700.1	Wheat	nucleus	15.69	12.27
PGSC0003DMT400032385	Potato	nucleus	17.34	11.7

Protein Annotations

EnsemblPlants:TraesCS1B01G426200.9	EnsemblPlantsGene:TraesCS1B01G426200	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF67	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16481	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1B:+:652453863..652456798

Molecular Weight (calculated)

58937.3 Da

IEP (calculated)

6.238

GRAVY (calculated)

-0.541

Length

548 amino acids

Sequence
(BLAST)

001: MPHRNMCWTH QGDNLESEEG QAQPENYNNG GTGSNLSNQG VQVALGAPGN TTNDGVRDSR SYYYESINNQ LQHAQNLYPY GGVDPSFVYP STMYNPGMST
101: PSVNRYVPHA SFGQGNPPPS PSYHQVATGT RDESSSSSSF GDATRESMKT RNAVIESGHH FDHGFASSSS SAHVPQNPAQ GTWGASFESH GAPNGSSADG
201: PNRSTPMAIH PALVRHGNYV FPAGHMGQGN TWTTHPANVI ADGVPHWAYN NAVLNPSGQF AHGTMGMPNG SLQDYQAGPS ANFHGPLPHF NQIPMHSMQT
301: PAMLNHIQMQ GPQRQSNVVQ GANPSGVVQG ANPSGVVQGA NPAGMVQGAN PAGMVQGANQ AGMVQGPNPS GMVQGANRSR RAFTWDPCLP FSSSGHTNGP
401: PVHAFFTDQV YNGSLRLLQQ AAMATMSTFY DAIHLIDEQW DMGLDIDGMT YEELLALQEQ IGDVNTGLPE RYICQNLRVH WYVVPRAARG SDQSVEKDAC
501: IICQEEFEAR DLVGALDCGH KYHEVCIRQW LMVKNLCPIC KATALPAE

Best Arabidopsis Sequence Match ( AT3G15070.1 )
(BLAST)

001: MRQRNMMTGS DMEQNSQSFV PHPEPRIGTN YLYPDIPPVN TVPHLEAHSL QEPYDNNSMF YGPPQYHHQH ASNLGSGMST APNFYVPYVN YEAPPSFLLS
101: HGSNDAVVGV TSTEHERNAH FMDHGFKRKS SEVIPGNSQY PVAPCSFPQL NTSETAPFSF PHFGTYPQPL DQRSVRNRAG AATMDPLLSH GHNNFSQGNY
201: AAHPFPPLGS IWYDQHCNGN RSDGSSSLWS QAPAVPYMHG NIATGSIESG NVCFPRYHET SSSRNPTPSV YQRNHYISHH PVPPPPIVYP HMPSASYAET
301: LHPASYSHMG QVQSTGFRIN QYPGEDFVPA AILRHRELPH FRAMPANENA FWEVGDFYNA VNYVDHHQDM RLDIEDMSYE ELLALSDQIG TVKTGLSSED
401: VKELLKRRTS TRINLEEGPS TDLETDSCTI CQENYKNEDK IATLDCMHKY HAECLKKWLV IKNVCPICKS EALVIEKKKK LRLSSR

Arabidopsis Description

At3g15070/K15M2_22 [Source:UniProtKB/TrEMBL;Acc:Q94F54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.