Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG22536 | Sorghum | nucleus | 87.78 | 70.67 |
| Zm00001d009571_P002 | Maize | nucleus | 83.37 | 66.6 |
| Os05t0564300-01 | Rice | nucleus | 54.77 | 44.8 |
| HORVU1Hr1G087900.1 | Barley | cytosol | 48.41 | 38.08 |
| TraesCS1D01G405800.9 | Wheat | cytosol | 47.68 | 37.21 |
| Zm00001d011541_P004 | Maize | nucleus | 47.43 | 36.6 |
| TraesCS1B01G426200.9 | Wheat | cytosol | 48.66 | 36.31 |
| TraesCS1A01G398300.8 | Wheat | cytosol | 47.68 | 36.18 |
| Zm00001d015453_P001 | Maize | cytosol | 4.89 | 15.5 |
| Zm00001d013776_P001 | Maize | cytosol | 4.65 | 14.73 |
| Zm00001d019616_P001 | Maize | cytosol | 4.65 | 14.73 |
| Solyc12g014070.1.1 | Tomato | nucleus | 17.6 | 13.46 |
| VIT_19s0014g01850.t01 | Wine grape | nucleus | 17.36 | 13.2 |
| PGSC0003DMT400039631 | Potato | nucleus | 17.11 | 13.06 |
| CDY24110 | Canola | nucleus | 14.67 | 13.04 |
| Bra039659.1-P | Field mustard | nucleus | 14.67 | 13.04 |
| CDY26006 | Canola | nucleus | 14.67 | 12.99 |
| PGSC0003DMT400054921 | Potato | nucleus | 16.14 | 12.72 |
| Solyc10g007140.2.1 | Tomato | nucleus | 16.14 | 12.72 |
| VIT_03s0088g01090.t01 | Wine grape | nucleus | 14.18 | 12.69 |
| VIT_03s0088g00930.t01 | Wine grape | nucleus, plastid | 11.98 | 12.47 |
| KRH26195 | Soybean | nucleus | 13.94 | 12.45 |
| CDY25871 | Canola | nucleus | 14.43 | 12.34 |
| Bra038109.1-P | Field mustard | nucleus | 14.43 | 12.29 |
| KRH55161 | Soybean | nucleus | 13.69 | 12.23 |
| KRH22017 | Soybean | nucleus | 15.65 | 12.12 |
| CDY55839 | Canola | nucleus | 14.43 | 12.07 |
| Zm00001d026446_P001 | Maize | cytosol | 5.38 | 11.96 |
| AT1G53190.1 | Thale cress | nucleus | 14.43 | 11.94 |
| Zm00001d011636_P001 | Maize | nucleus | 9.78 | 11.83 |
| AT3G15070.1 | Thale cress | nucleus | 13.94 | 11.73 |
| Zm00001d006226_P001 | Maize | peroxisome | 9.05 | 11.64 |
| Zm00001d021225_P002 | Maize | cytosol | 4.89 | 11.43 |
| VIT_03s0097g00680.t01 | Wine grape | nucleus | 11.74 | 11.4 |
| CDY68521 | Canola | nucleus | 12.22 | 11.34 |
| Zm00001d043784_P002 | Maize | nucleus | 9.54 | 11.27 |
| Zm00001d048301_P001 | Maize | cytosol | 6.36 | 10.79 |
| CDX82450 | Canola | nucleus | 11.74 | 10.71 |
| CDX97629 | Canola | nucleus | 11.49 | 10.66 |
| CDX75805 | Canola | cytosol | 11.49 | 10.61 |
| Bra027282.1-P | Field mustard | nucleus | 11.49 | 10.56 |
| Bra001582.1-P | Field mustard | nucleus | 11.25 | 10.53 |
| Zm00001d053212_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 7.33 | 10.45 |
| Zm00001d027868_P004 | Maize | cytosol | 6.85 | 10.37 |
| Zm00001d038909_P001 | Maize | cytosol, mitochondrion | 9.54 | 10.16 |
| Zm00001d021314_P005 | Maize | cytosol, mitochondrion, nucleus | 7.82 | 9.94 |
| Zm00001d008649_P003 | Maize | cytosol | 12.71 | 9.87 |
| Zm00001d039769_P002 | Maize | cytosol | 12.96 | 9.62 |
| KRH30071 | Soybean | cytosol | 8.07 | 9.59 |
| Zm00001d002624_P003 | Maize | cytosol | 7.82 | 9.52 |
| Zm00001d026248_P001 | Maize | nucleus | 8.8 | 9.47 |
| Zm00001d024406_P002 | Maize | nucleus | 8.07 | 9.22 |
| Zm00001d015289_P001 | Maize | nucleus | 12.47 | 9.01 |
| KRH55165 | Soybean | nucleus | 6.85 | 9.0 |
| Zm00001d045517_P001 | Maize | mitochondrion, nucleus | 5.87 | 8.96 |
| KRH55090 | Soybean | nucleus | 7.82 | 8.6 |
| Zm00001d025027_P002 | Maize | nucleus | 14.43 | 8.48 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 8.07 | 8.31 |
| Zm00001d004300_P003 | Maize | nucleus | 13.69 | 8.07 |
| Zm00001d002080_P002 | Maize | nucleus | 12.71 | 7.84 |
| Zm00001d026445_P001 | Maize | nucleus | 12.22 | 7.63 |
| Solyc07g062720.1.1 | Tomato | nucleus | 14.18 | 7.48 |
| PGSC0003DMT400032385 | Potato | nucleus | 14.67 | 7.39 |
| Zm00001d014609_P002 | Maize | nucleus | 10.51 | 7.35 |
| Zm00001d037536_P006 | Maize | mitochondrion, plastid | 9.78 | 6.5 |
| Zm00001d015323_P002 | Maize | cytosol | 0.98 | 3.54 |
Protein Annotations
| EnsemblPlants:Zm00001d039015_P002 | EnsemblPlants:Zm00001d039015_T002 | EnsemblPlantsGene:Zm00001d039015 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF67 | ProteinID:AQK88525.1 |
| ProteinID:AQK88526.1 | ProteinID:AQK88527.1 | SEG:seg | UniParc:UPI0008425A7B | UniProt:A0A1D6MCW4 | MapMan:35.1 |
Description
Putative RING zinc finger domain superfamily protein
Coordinates
chr6:+:168716964..168722841
Molecular Weight (calculated)
43875.9 Da
IEP (calculated)
6.208
GRAVY (calculated)
-0.311
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MTHRNMLWTH QSVNPEWEQR HAQVQPGSSY YAGTASDSSN LGVQVAVGVP GNTANVGICD LRNHECPHVH NSYPHAGVTS RFVFPTTMYN PSMSAAAVNI
101: YIPQTQSFGL GSVLPPSLHN QVPTGTIDES SSSVNFGDSA IGFMKRKNAV VAGSHHFLHG FAGSSSSVHV PQNPVHGPWN PSSQSNCLPS SAASNLPEYH
201: NSNGWPYLEE SSADASNSFS SVAACQELAP HGNYLYPACH ISQSNTWVPQ PAGYGVPQWG YSNAVVNPPG TADMSNGPLP HFCQNSMQAP QIQVSHQQFI
301: GNNAVHGLNP SATGLPLHPR MLALPFNAEH TFGHPMHPPL INQELVALQE QIGDVNTGLT ESYIQENLRS SFHVPGAASM SDQFSELSLE NDACIICQVN
401: LLPCSDVQC
101: YIPQTQSFGL GSVLPPSLHN QVPTGTIDES SSSVNFGDSA IGFMKRKNAV VAGSHHFLHG FAGSSSSVHV PQNPVHGPWN PSSQSNCLPS SAASNLPEYH
201: NSNGWPYLEE SSADASNSFS SVAACQELAP HGNYLYPACH ISQSNTWVPQ PAGYGVPQWG YSNAVVNPPG TADMSNGPLP HFCQNSMQAP QIQVSHQQFI
301: GNNAVHGLNP SATGLPLHPR MLALPFNAEH TFGHPMHPPL INQELVALQE QIGDVNTGLT ESYIQENLRS SFHVPGAASM SDQFSELSLE NDACIICQVN
401: LLPCSDVQC
001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
Arabidopsis Description
At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.