Factsheet for Solyc12g014070.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039631	Potato	nucleus	97.01	96.83
Solyc10g007140.2.1	Tomato	nucleus	59.63	61.46
VIT_19s0014g01850.t01	Wine grape	nucleus	48.22	47.96
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	32.71	44.53
VIT_03s0097g00680.t01	Wine grape	nucleus	33.64	42.76
VIT_03s0088g01090.t01	Wine grape	nucleus	36.07	42.23
KRH26195	Soybean	nucleus	34.39	40.17
KRH55161	Soybean	nucleus	34.21	39.96
KRH22017	Soybean	nucleus	37.76	38.26
KRH30071	Soybean	cytosol	23.74	36.92
Solyc07g062720.1.1	Tomato	nucleus	48.97	33.81
AT1G53190.1	Thale cress	nucleus	29.91	32.39
CDY26006	Canola	nucleus	27.85	32.25
CDY24110	Canola	nucleus	27.66	32.17
Bra039659.1-P	Field mustard	nucleus	27.66	32.17
KRH55090	Soybean	nucleus	21.5	30.91
KRH55165	Soybean	nucleus	17.94	30.87
CDY25871	Canola	nucleus	26.92	30.13
Bra038109.1-P	Field mustard	nucleus	26.92	30.0
Bra027282.1-P	Field mustard	nucleus	24.67	29.66
CDY68521	Canola	nucleus	24.3	29.48
CDY55839	Canola	nucleus	26.92	29.45
AT3G15070.1	Thale cress	nucleus	26.54	29.22
CDX97629	Canola	nucleus	23.93	29.02
CDX75805	Canola	cytosol	23.36	28.22
Bra001582.1-P	Field mustard	nucleus	22.99	28.15
Solyc12g010500.1.1	Tomato	nucleus	9.35	27.93
CDX82450	Canola	nucleus	23.18	27.68
EES03404	Sorghum	nucleus	23.74	24.38
Solyc09g007530.2.1	Tomato	nucleus	24.49	24.17
Solyc12g019190.1.1	Tomato	mitochondrion	9.72	23.64
Os01t0667700-02	Rice	nucleus	22.8	23.28
Zm00001d011541_P004	Maize	nucleus	22.99	23.21
Os05t0564300-01	Rice	nucleus	21.5	23.0
Zm00001d009571_P002	Maize	nucleus	21.87	22.85
KXG22536	Sorghum	nucleus	21.68	22.83
Solyc11g062260.1.1	Tomato	nucleus	10.47	22.76
Solyc12g019200.1.1	Tomato	mitochondrion	9.35	22.73
TraesCS3A01G246900.3	Wheat	nucleus	21.31	21.63
TraesCS3D01G244600.1	Wheat	nucleus	21.31	21.59
HORVU3Hr1G061010.4	Barley	nucleus	21.12	21.48
TraesCS3B01G272400.4	Wheat	nucleus	21.12	21.4
HORVU1Hr1G087900.1	Barley	cytosol	19.81	20.38
Solyc12g040390.1.1	Tomato	nucleus, plastid	11.59	20.33
TraesCS1A01G398300.8	Wheat	cytosol	19.81	19.67
TraesCS1D01G405800.9	Wheat	cytosol	19.25	19.66
TraesCS1B01G426200.9	Wheat	cytosol	19.81	19.34
Solyc03g026150.2.1	Tomato	nucleus	8.04	18.14
Solyc03g118840.2.1	Tomato	nucleus	12.9	17.83
Zm00001d039015_P002	Maize	cytosol	13.46	17.6
Solyc12g088740.1.1	Tomato	nucleus	21.5	16.59
Solyc09g007620.1.1	Tomato	nucleus	5.42	16.57
Solyc04g078680.2.1	Tomato	nucleus	21.5	15.93
Solyc12g096420.1.1	Tomato	nucleus	15.89	15.43
Solyc01g087060.2.1	Tomato	nucleus	10.65	15.41
Solyc01g107940.2.1	Tomato	nucleus	20.0	15.13
Solyc05g008840.1.1	Tomato	nucleus, plastid	6.17	15.0
Solyc08g006460.2.1	Tomato	nucleus	14.58	14.69
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	19.44	14.33
Solyc01g107930.2.1	Tomato	nucleus	18.13	13.51
Solyc02g005480.2.1	Tomato	nucleus	5.79	11.57

Protein Annotations

EnsemblPlants:Solyc12g014070.1.1	EnsemblPlantsGene:Solyc12g014070.1	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF48	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000276A649	UniProt:K4DCU2	MapMan:35.1	:

Description

No Description!

Coordinates

chr12:+:4889094..4892699

Molecular Weight (calculated)

58586.7 Da

IEP (calculated)

6.528

GRAVY (calculated)

-0.501

Length

535 amino acids

Sequence
(BLAST)

001: MEADQQGQEF FHSAPCMFYG SIAALPQPTV HAVVPAPVNA GNIYLHHVSD HQEGPLTYGL TQFNGIQHQH PASNPDLAIS ASNHYNPYMA VPSASGDFPI
101: PVNHGPLDRL HTSSHNIFGM NSDYGRNNHY MDDVRGSYKR KNAEGIPANL QYHHALAGSS SSVAPMIARA HESDVPMDAA SFTPSDYGGN SSSYIEDGAL
201: RSMSNRSGAS GPENIVRHNH NHLFQGNYIS QTHQLPGNPW LDQQFNSNGS ETQTWAWNQA APLPYVPGGI GGCVDAGNMG LRGYHMTSSN GGLTSFPHPP
301: IPQGLPGLHH LPPNIQGMRG QPISFPPQMT ASSSHRHLPN NSSNITTNLM QGVVEAGPRY MPSLPTGFGL YRPHRRAIVL ERNTRHQNLP NMRVLPEDGV
401: AMLDVSGYHE VNNPIDQHRD MRLDVDHMSY EELLALGEQI GNVTTGLSDE IIVNRLKTRS FSPPVIPCTL ETAACLDHEA DFCVICQTDY NKQETIGTLD
501: CGHEYHAECV KKWLVVKNTC PICKSTGLSI ERKDL

Best Arabidopsis Sequence Match ( AT1G53190.2 )
(BLAST)

001: MGQRNRNVDL EMEQQQSQAS LQAEPCILLG SFPQQPDNNN MPAMVAHVPN LEPHSLQDPT YDNSAMFYGL PQYHHHPHQR VPTNFYVPYV AFQAPPGQLP
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV

Arabidopsis Description

At1g53190 [Source:UniProtKB/TrEMBL;Acc:Q5EAI9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.