Factsheet for Solyc09g007530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004449	Potato	nucleus	95.94	95.94
VIT_08s0040g02160.t01	Wine grape	nucleus	57.2	56.78
GSMUA_AchrUn_...	Banana	nucleus	11.07	53.57
KRG95955	Soybean	nucleus	52.03	51.37
KRH19845	Soybean	nucleus	51.66	50.91
KRH32434	Soybean	nucleus	50.0	50.28
KRH67668	Soybean	nucleus	50.55	49.73
GSMUA_Achr5P08460_001	Banana	nucleus	32.29	30.49
Solyc12g010500.1.1	Tomato	nucleus	8.3	25.14
Solyc12g014070.1.1	Tomato	nucleus	24.17	24.49
Solyc11g062260.1.1	Tomato	nucleus	10.52	23.17
Solyc10g007140.2.1	Tomato	nucleus	22.14	23.12
Os01t0159300-01	Rice	nucleus	21.03	22.75
Zm00001d008649_P003	Maize	cytosol	21.96	22.58
EES00281	Sorghum	nucleus	20.66	21.75
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	20.3	21.48
Os05t0163400-03	Rice	nucleus	21.03	21.39
Zm00001d039769_P002	Maize	cytosol	21.4	21.05
TraesCS1B01G129600.1	Wheat	nucleus	20.48	20.79
TraesCS1A01G107600.1	Wheat	nucleus	20.48	20.67
TraesCS1D01G111500.1	Wheat	nucleus	20.3	20.52
HORVU1Hr1G024190.2	Barley	nucleus	20.3	20.48
Solyc12g019190.1.1	Tomato	mitochondrion	8.3	20.45
Solyc12g040390.1.1	Tomato	nucleus, plastid	11.44	20.33
Solyc12g019200.1.1	Tomato	mitochondrion	8.12	20.0
EES19093	Sorghum	nucleus	19.74	19.89
TraesCS3D01G105300.1	Wheat	cytosol	19.0	19.88
TraesCS3B01G120600.2	Wheat	cytosol	18.82	19.69
TraesCS3A01G103000.1	Wheat	nucleus	18.82	19.65
Solyc03g026150.2.1	Tomato	nucleus	8.49	19.41
Solyc03g118840.2.1	Tomato	nucleus	13.84	19.38
Solyc08g006460.2.1	Tomato	nucleus	17.34	17.7
HORVU3Hr1G018800.2	Barley	cytosol, plastid	19.19	17.66
Solyc12g088740.1.1	Tomato	nucleus	22.51	17.6
Solyc01g107940.2.1	Tomato	nucleus	21.59	16.55
Solyc04g078680.2.1	Tomato	nucleus	21.96	16.48
Solyc01g107930.2.1	Tomato	nucleus	21.4	16.16
Solyc12g096420.1.1	Tomato	nucleus	16.24	15.97
Solyc05g008840.1.1	Tomato	nucleus, plastid	6.27	15.45
Solyc07g062720.1.1	Tomato	nucleus	20.85	14.58
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	19.19	14.33
Solyc01g087060.2.1	Tomato	nucleus	9.78	14.32
Solyc09g007620.1.1	Tomato	nucleus	3.87	12.0
Solyc02g005480.2.1	Tomato	nucleus	5.72	11.57
CDY47948	Canola	nucleus	9.96	10.74
Bra036336.1-P	Field mustard	nucleus	9.96	10.74
Bra028576.1-P	Field mustard	cytosol	4.24	8.13

Protein Annotations

EnsemblPlants:Solyc09g007530.2.1	EnsemblPlantsGene:Solyc09g007530.2	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF47	PFAM:PF13639	PFscan:PS50089	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI000276B8EE	UniProt:K4CQE2	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr9:-:1106574..1110425

Molecular Weight (calculated)

59626.4 Da

IEP (calculated)

6.673

GRAVY (calculated)

-0.780

Length

542 amino acids

Sequence
(BLAST)

001: MGHRNSFNTP PIFGTEDDQR WNIPEQAPLP YARTGVPESS NIVYPVDSMS IDGAHHSSQG HGSRPSGYSS LNPNMEIPHC QPQVQGPLHD PFLHSGTGGF
101: HMIHENYPHQ ASSSAHGGQT YHGVDGGLVD LTMGSGRGPY KRKSPGIPAG GESGSTSRYF DAGSSSDLPS ESWQEKQNPD PHYTTWGLHP NYRGNSLSIG
201: GEGSQRNVRS RAAFDLQNNV GRAHITSTPS HHSNSSRTST DYCNSVNYLA PSSNSSAREW NHTVMPPAAA HGRNFAPDAS FFCYDMNHYD MVTGNISTSL
301: EMGNYHNDFT SNRTSLPQHL PGSLPSSRGV RSSYSQRSSP TFRTSSSYLR HGHVGTSDDG SQLFAEGYSS RHSRPLSTLG LRSSDRNGRT RVSSDRYRSL
401: AGEAGFREQV ASEGVIIPDR STYYGSRSMF DQHRDMRLDI DDMGYEELLA LGERIGHVNT GLSEELISKC MTESIYCSSG QNHEEGNCVI CLEEYVNMDD
501: VGTLKSCIHD FHVGCIRRWL SMKNVCPICK KTALDDDDLK EK

Best Arabidopsis Sequence Match ( AT2G37150.10 )
(BLAST)

001: MGHRHFLGSS QFFDDEHDQG WNHTHPEHPY SSQATSGTSE NRSHVYPAEN MLNEGMPVSS HWNSSPGPNA YTDSGHSVER PHYNPGVSGP SHDPSVNSTV
101: PTFSAPHENY VTFASSSSYN SQTWSNASYV DHQSMESVRG AQKRKRPCPS SIYEMGSSSQ YHGDRTPADT HFPSELHLGK SITHDHDPHY MPWLMNPTYR
201: SNNLSIRGES SSRNVRSRPT LDSETSLGRN NLPRSLSLDS HSTHHHSVDH YGSGQFPGQT SHGNKDWNCA RLSPVLRDIN GFSPETNNFL PARSVVNSLS
301: VNTSGYHHHE LTGNRNPTVS HGVPGTSTLS TSSSRFSHRS TSTYRSSSHG SRSGHVASSS GDRSHLVTET YPSRHLRPPP HISWRSGDRP GRRRSSYERF
401: QPPFDEVALH ERFSSEEFMV EDRQPQYYGS RNMLDHHRDM RLDIDNMSYE ELLDLGERIG SVNTGLSDSA ISSCLLATMY YPSYQTEEQR KCAICLEEYK
501: EKEELGEVKG CGHDYHGRCI KKWLSMKNSC PICKSPALPD ASKNSS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.