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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • plastid 5
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3D01G260700.1 Wheat nucleus 26.89 41.0
Solyc03g118840.2.1 Tomato nucleus 51.15 40.31
VIT_17s0000g03210.t01 Wine grape nucleus 48.2 39.62
KRH48568 Soybean nucleus 39.67 34.18
KRH41763 Soybean nucleus 41.64 33.69
KRH39137 Soybean nucleus 39.67 32.79
TraesCS3B01G293600.1 Wheat nucleus 36.07 32.07
TraesCS3A01G260500.1 Wheat nucleus 35.74 31.59
Zm00001d043784_P002 Maize nucleus 35.74 31.5
GSMUA_Achr9P21480_001 Banana plastid 35.08 31.47
Zm00001d011636_P001 Maize nucleus 34.75 31.36
OQU87370 Sorghum nucleus 35.41 30.95
GSMUA_Achr4P11130_001 Banana nucleus, plastid 33.77 30.84
GSMUA_Achr3P29390_001 Banana golgi, plastid 37.38 30.0
KRH60461 Soybean nucleus 42.3 29.93
VIT_01s0011g04080.t01 Wine grape nucleus 34.43 29.91
GSMUA_Achr1P23200_001 Banana nucleus 34.75 29.44
CDY11092 Canola cytosol, plastid 33.44 29.31
CDX73013 Canola plastid 34.1 29.3
CDY60141 Canola plastid 34.1 29.13
Bra015967.1-P Field mustard nucleus 34.1 29.13
Bra003830.1-P Field mustard nucleus, plastid 32.13 28.91
CDX68213 Canola nucleus, plastid 32.79 28.65
CDX83878 Canola nucleus 33.44 28.57
AT1G73760.1 Thale cress nucleus, plastid 34.1 28.34
Bra016574.1-P Field mustard nucleus 33.11 28.21
HORVU3Hr1G064370.1 Barley plastid 35.41 28.05
CDX96741 Canola nucleus 33.44 28.02
TraesCS1B01G393400.2 Wheat nucleus 31.8 27.87
TraesCS1A01G373200.1 Wheat nucleus 31.48 27.51
TraesCS1D01G380000.2 Wheat nucleus 31.15 27.46
AT1G17970.1 Thale cress nucleus 33.11 27.45
Os05t0550000-00 Rice nucleus 32.13 26.92
Solyc05g008840.1.1 Tomato nucleus, plastid 18.69 25.91
EES18624 Sorghum cytosol, mitochondrion, nucleus, plastid 31.8 25.8
Zm00001d038909_P001 Maize cytosol, mitochondrion 31.48 25.0
HORVU1Hr1G082970.1 Barley plastid 29.18 23.61
AT4G00070.1 Thale cress nucleus 13.77 23.46
Solyc12g010500.1.1 Tomato nucleus 12.46 21.23
Solyc09g007620.1.1 Tomato nucleus 9.51 16.57
AT1G36950.1 Thale cress cytosol 12.13 16.37
Solyc12g019190.1.1 Tomato mitochondrion 11.8 16.36
Solyc11g062260.1.1 Tomato nucleus 12.79 15.85
Solyc12g019200.1.1 Tomato mitochondrion 11.15 15.45
Solyc03g026150.2.1 Tomato nucleus 11.8 15.19
Solyc12g096420.1.1 Tomato nucleus 24.59 13.61
Solyc08g006460.2.1 Tomato nucleus 23.61 13.56
Solyc12g088740.1.1 Tomato nucleus 27.21 11.98
Solyc04g078680.2.1 Tomato nucleus 27.87 11.77
Solyc10g007140.2.1 Tomato nucleus 20.0 11.75
Solyc01g087060.2.1 Tomato nucleus 14.1 11.62
Solyc12g014070.1.1 Tomato nucleus 20.33 11.59
Solyc09g007530.2.1 Tomato nucleus 20.33 11.44
Solyc01g107930.2.1 Tomato nucleus 23.93 10.17
Solyc10g050170.1.1 Tomato mitochondrion, nucleus 23.28 9.78
Solyc01g107940.2.1 Tomato nucleus 21.64 9.34
Solyc07g062720.1.1 Tomato nucleus 19.67 7.74
Solyc02g005480.2.1 Tomato nucleus 4.92 5.6
Protein Annotations
Gene3D:3.30.40.10MapMan:35.1GO:GO:0003674GO:GO:0005488GO:GO:0008270GO:GO:0046872
InterPro:IPR001841InterPro:IPR011016InterPro:IPR013083UniProt:K4DET4PFAM:PF13639PFscan:PS50089
PANTHER:PTHR22937PANTHER:PTHR22937:SF98SMART:SM00184SMART:SM00744SUPFAM:SSF57850EnsemblPlantsGene:Solyc12g040390.1
EnsemblPlants:Solyc12g040390.1.1UniParc:UPI000276A683InterPro:Znf_RINGInterPro:Znf_RING-CHInterPro:Znf_RING/FYVE/PHDSEG:seg
Description
No Description!
Coordinates
chr12:-:44105103..44107264
Molecular Weight (calculated)
34904.5 Da
IEP (calculated)
9.154
GRAVY (calculated)
-0.781
Length
305 amino acids
Sequence
(BLAST)
001: MAQSILMPGR SFTMSRNQAR NKETRSKNQK NPEKKIKRNP INSTISSTHE WPTTPIAKKK KNFTPFRCVG CRETSQLSVP APIADSQSKK KKKKLRTKTL
101: NFFDGDFDDF VVSRKPHSSK GRVDADKITP KESMQRMVTG SEDYPVLDTA TLERPHSRAD WFGFGHHSHF DFSEGLSEFV MLQNSFMGGR TDCPDRYRSL
201: RLNVDNMSYE ELVELGDRIG YVSTGLKENE ITQCVRRTKP VSLNNFSHLH TVVEKNCSIC QEEYEADDEM GKLGCGHFYH IDCIKQWLMH KNNCPVCKSV
301: AMSTC
Best Arabidopsis Sequence Match ( AT1G73760.1 )
(BLAST)
001: MPVSAEPSSS SSTTIGQHMR LQRPRNHRNL PPISTADEPL IPKPSRVSKS AMSSFFLLPE TTKKKPNGTA SFRGLGCTTS ASQQVSVPAV IRSSADWDAS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS
Arabidopsis Description
Putative RING zinc finger protein; 69105-67310 [Source:UniProtKB/TrEMBL;Acc:Q9C9T6]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.