Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016574.1-P | Field mustard | nucleus | 97.53 | 99.16 |
| CDX83878 | Canola | nucleus | 92.86 | 94.68 |
| AT1G17970.1 | Thale cress | nucleus | 77.47 | 76.63 |
| CDY60141 | Canola | plastid | 55.49 | 56.58 |
| CDX73013 | Canola | plastid | 54.95 | 56.34 |
| CDY11092 | Canola | cytosol, plastid | 52.47 | 54.89 |
| CDX68213 | Canola | nucleus, plastid | 52.47 | 54.73 |
| VIT_17s0000g03210.t01 | Wine grape | nucleus | 42.86 | 42.05 |
| TraesCS3D01G260700.1 | Wheat | nucleus | 22.53 | 41.0 |
| KRH41763 | Soybean | nucleus | 41.76 | 40.32 |
| KRH48568 | Soybean | nucleus | 39.01 | 40.11 |
| KRH39137 | Soybean | nucleus | 40.38 | 39.84 |
| Solyc03g118840.2.1 | Tomato | nucleus | 39.56 | 37.21 |
| PGSC0003DMT400014732 | Potato | nucleus | 39.01 | 36.6 |
| PGSC0003DMT400078539 | Potato | plastid | 25.0 | 36.55 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 32.97 | 35.93 |
| KRH60461 | Soybean | nucleus | 41.76 | 35.27 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 32.69 | 35.0 |
| TraesCS3B01G293600.1 | Wheat | nucleus | 32.97 | 34.99 |
| TraesCS3A01G260500.1 | Wheat | nucleus | 32.97 | 34.78 |
| Solyc12g040390.1.1 | Tomato | nucleus, plastid | 28.02 | 33.44 |
| Solyc05g008840.1.1 | Tomato | nucleus, plastid | 20.05 | 33.18 |
| Zm00001d011636_P001 | Maize | nucleus | 30.49 | 32.84 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 33.52 | 32.11 |
| OQU87370 | Sorghum | nucleus | 30.77 | 32.09 |
| Zm00001d043784_P002 | Maize | nucleus | 30.49 | 32.08 |
| VIT_01s0011g04080.t01 | Wine grape | nucleus | 30.49 | 31.62 |
| TraesCS1D01G380000.2 | Wheat | nucleus | 29.67 | 31.21 |
| TraesCS1B01G393400.2 | Wheat | nucleus | 29.4 | 30.75 |
| TraesCS1A01G373200.1 | Wheat | nucleus | 29.12 | 30.37 |
| AT4G00070.1 | Thale cress | nucleus | 14.84 | 30.17 |
| HORVU3Hr1G064370.1 | Barley | plastid | 31.87 | 30.13 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 28.85 | 29.17 |
| Os05t0550000-00 | Rice | nucleus | 28.85 | 28.85 |
| EES18624 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 28.57 | 27.66 |
| Zm00001d038909_P001 | Maize | cytosol, mitochondrion | 28.85 | 27.34 |
| HORVU1Hr1G082970.1 | Barley | plastid | 27.47 | 26.53 |
| CDX97032 | Canola | plastid | 19.78 | 21.49 |
| AT1G36950.1 | Thale cress | cytosol | 13.19 | 21.24 |
| CDY71882 | Canola | plastid | 19.78 | 20.57 |
| CDY13429 | Canola | cytosol | 13.74 | 19.38 |
| CDY40109 | Canola | nucleus | 9.89 | 19.35 |
| CDX85750 | Canola | nucleus | 20.33 | 19.17 |
| CDY27083 | Canola | nucleus | 10.71 | 17.81 |
| CDX91624 | Canola | nucleus | 10.71 | 17.73 |
| CDX77848 | Canola | nucleus | 10.16 | 17.45 |
| CDY67192 | Canola | nucleus | 9.89 | 16.9 |
| CDX95473 | Canola | nucleus | 21.43 | 16.81 |
| CDX91625 | Canola | cytosol | 10.44 | 16.59 |
| CDY53710 | Canola | nucleus | 10.99 | 16.53 |
| CDX78393 | Canola | nucleus | 21.98 | 16.19 |
| CDY32973 | Canola | nucleus | 17.86 | 15.85 |
| CDX93901 | Canola | nucleus | 10.44 | 15.83 |
| CDY68658 | Canola | nucleus | 20.33 | 15.78 |
| CDX97044 | Canola | nucleus | 21.98 | 15.69 |
| CDX70363 | Canola | nucleus | 20.88 | 15.64 |
| CDX88140 | Canola | nucleus | 20.6 | 15.56 |
| CDY43590 | Canola | nucleus | 17.58 | 15.2 |
| CDY68521 | Canola | nucleus | 17.86 | 14.74 |
| CDY31919 | Canola | nucleus | 10.99 | 14.65 |
| CDY00512 | Canola | nucleus | 10.99 | 14.65 |
| CDX69813 | Canola | mitochondrion | 21.43 | 14.63 |
| CDY27082 | Canola | cytosol | 9.34 | 14.29 |
| CDX97629 | Canola | nucleus | 17.03 | 14.06 |
| CDX75805 | Canola | cytosol | 15.93 | 13.09 |
| CDY17114 | Canola | nucleus | 18.96 | 12.99 |
| CDY24110 | Canola | nucleus | 16.21 | 12.83 |
| CDY26006 | Canola | nucleus | 16.21 | 12.77 |
| CDX82450 | Canola | nucleus | 15.66 | 12.72 |
| CDY62314 | Canola | nucleus | 20.05 | 12.33 |
| CDX79718 | Canola | nucleus | 17.86 | 12.24 |
| CDY37230 | Canola | nucleus | 19.78 | 12.22 |
| CDY17061 | Canola | nucleus | 20.33 | 12.21 |
| CDY43220 | Canola | nucleus | 20.33 | 12.15 |
| CDY24595 | Canola | nucleus | 10.44 | 12.06 |
| CDY46757 | Canola | nucleus | 17.58 | 12.01 |
| CDY25357 | Canola | nucleus | 10.44 | 11.88 |
| CDY55435 | Canola | nucleus | 17.03 | 11.74 |
| CDY68424 | Canola | nucleus | 17.31 | 11.73 |
| CDY25871 | Canola | nucleus | 15.38 | 11.72 |
| CDY63645 | Canola | nucleus | 14.84 | 11.69 |
| CDX71531 | Canola | nucleus | 20.33 | 11.62 |
| CDY22376 | Canola | nucleus | 19.51 | 11.54 |
| CDY33429 | Canola | nucleus | 10.44 | 11.52 |
| CDY42218 | Canola | nucleus | 10.44 | 11.38 |
| CDY55839 | Canola | nucleus | 15.11 | 11.25 |
| CDY13433 | Canola | nucleus | 14.29 | 11.16 |
| CDY69560 | Canola | nucleus | 5.22 | 3.73 |
| CDY47948 | Canola | nucleus | 4.95 | 3.58 |
| CDY36635 | Canola | nucleus | 5.22 | 3.19 |
Protein Annotations
| EnsemblPlants:CDX96741 | EnsemblPlantsGene:GSBRNA2T00102960001 | Gene3D:3.30.40.10 | GO:A0A078E650 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF98 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDX96741 | ProteinID:CDX96741.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EE2F19 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA08g22840D
Coordinates
chrLK031895:-:786800..788877
Molecular Weight (calculated)
40663.3 Da
IEP (calculated)
9.763
GRAVY (calculated)
-0.690
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTTIGEHI KLRRARHQTI RHSAADEDPP LTHVVPPISQ PTRFCNSAMS SFLLLPTSSN EPAKKKQLGF PQAASFRGMN CTAAAAAHEV SVPSAIRSSA
101: DWDKKKKKKN KKKKKKKKGS YEDGSVRFLS EARDVDGSGG CVAVPDVWCG PGLGFSTDAV SVDPPRRNLP SSRRKIDVDK NSSNQTEGSS VLTRRFTNQE
201: SHSHAFMGSD STFMTSSHVE PTLLSSRYHG HLRRPYPDDL TEMMMLRNGF VMGRTTDSLD HFHSLRLDVD NMSYEQLLEL GDRIGYVNTG LKESEIRRCL
301: RKINPSVSNT LADRKCSICQ DEYERECQVG KLECGHSFHV QCVKQWLSRK NACPVCKKTA YVKP
101: DWDKKKKKKN KKKKKKKKGS YEDGSVRFLS EARDVDGSGG CVAVPDVWCG PGLGFSTDAV SVDPPRRNLP SSRRKIDVDK NSSNQTEGSS VLTRRFTNQE
201: SHSHAFMGSD STFMTSSHVE PTLLSSRYHG HLRRPYPDDL TEMMMLRNGF VMGRTTDSLD HFHSLRLDVD NMSYEQLLEL GDRIGYVNTG LKESEIRRCL
301: RKINPSVSNT LADRKCSICQ DEYERECQVG KLECGHSFHV QCVKQWLSRK NACPVCKKTA YVKP
001: MSSTTIGEHI RLRRARNQTI RHLHAADDDP PLSHVVLPIS QPNRFCNSAM SSFFPLPTSS SNESTRKKPY QTSSFRGMGC YAAAAAAAQE VSVPSVIRYS
101: ADLDARIRKD KKKKKHKHKK KKKKNKGSYE DGSIRILSEE ARDVIDVWCR PGLGFSTDAV IGRSVDPPRG RNIPSSRRKI DVDNNNYNHT LGSSVLPIRF
201: LNQETHSHDI FNSDSTFVTS SRAEPTMLSS RCRGHLPRSY PDDLTEMRML QNGFVMGRIT DSRDNYHELR LDVDSMSYEQ LLELGDRIGY VNTGLKESEI
301: HRCLGKIKPS VSHTLVDRKC SICQDEYERE DEVGELNCGH SFHVHCVKQW LSRKNACPVC KKAAYGKP
101: ADLDARIRKD KKKKKHKHKK KKKKNKGSYE DGSIRILSEE ARDVIDVWCR PGLGFSTDAV IGRSVDPPRG RNIPSSRRKI DVDNNNYNHT LGSSVLPIRF
201: LNQETHSHDI FNSDSTFVTS SRAEPTMLSS RCRGHLPRSY PDDLTEMRML QNGFVMGRIT DSRDNYHELR LDVDSMSYEQ LLELGDRIGY VNTGLKESEI
301: HRCLGKIKPS VSHTLVDRKC SICQDEYERE DEVGELNCGH SFHVHCVKQW LSRKNACPVC KKAAYGKP
Arabidopsis Description
At1g17970/F2H15_16 [Source:UniProtKB/TrEMBL;Acc:Q944L9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.