Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES18624 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 85.42 | 87.23 |
| TraesCS1A01G373200.1 | Wheat | nucleus | 58.07 | 63.9 |
| TraesCS1B01G393400.2 | Wheat | nucleus | 56.25 | 62.07 |
| TraesCS1D01G380000.2 | Wheat | nucleus | 55.21 | 61.27 |
| Os05t0550000-00 | Rice | nucleus | 57.55 | 60.71 |
| Zm00001d011636_P001 | Maize | nucleus | 50.26 | 57.1 |
| Zm00001d043784_P002 | Maize | nucleus | 51.04 | 56.65 |
| HORVU1Hr1G082970.1 | Barley | plastid | 52.34 | 53.32 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 43.23 | 49.7 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 42.97 | 48.53 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 44.27 | 44.74 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 35.94 | 38.33 |
| VIT_17s0000g03210.t01 | Wine grape | nucleus | 35.42 | 36.66 |
| PGSC0003DMT400078539 | Potato | plastid | 22.66 | 34.94 |
| Solyc03g118840.2.1 | Tomato | nucleus | 33.33 | 33.07 |
| VIT_01s0011g04080.t01 | Wine grape | nucleus | 30.21 | 33.05 |
| KRH48568 | Soybean | nucleus | 30.21 | 32.77 |
| PGSC0003DMT400014732 | Potato | nucleus | 32.81 | 32.47 |
| Zm00001d026446_P001 | Maize | cytosol | 15.1 | 31.52 |
| Solyc12g040390.1.1 | Tomato | nucleus, plastid | 25.0 | 31.48 |
| KRH39137 | Soybean | nucleus | 30.21 | 31.44 |
| Bra003830.1-P | Field mustard | nucleus, plastid | 27.34 | 30.97 |
| CDX73013 | Canola | plastid | 28.12 | 30.42 |
| KRH41763 | Soybean | nucleus | 29.69 | 30.24 |
| CDX83878 | Canola | nucleus | 27.86 | 29.97 |
| Bra015967.1-P | Field mustard | nucleus | 27.86 | 29.97 |
| CDY60141 | Canola | plastid | 27.86 | 29.97 |
| CDX68213 | Canola | nucleus, plastid | 27.08 | 29.8 |
| Bra016574.1-P | Field mustard | nucleus | 27.6 | 29.61 |
| CDX96741 | Canola | nucleus | 27.34 | 28.85 |
| CDY11092 | Canola | cytosol, plastid | 25.52 | 28.16 |
| Zm00001d015453_P001 | Maize | cytosol | 9.38 | 27.91 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 26.56 | 27.79 |
| Zm00001d019616_P001 | Maize | cytosol | 9.11 | 27.13 |
| Zm00001d013776_P001 | Maize | cytosol | 9.11 | 27.13 |
| Solyc05g008840.1.1 | Tomato | nucleus, plastid | 15.1 | 26.36 |
| AT1G17970.1 | Thale cress | nucleus | 25.26 | 26.36 |
| KRH60461 | Soybean | nucleus | 29.17 | 25.99 |
| AT4G00070.1 | Thale cress | nucleus | 10.94 | 23.46 |
| Zm00001d021225_P002 | Maize | cytosol | 10.42 | 22.86 |
| Zm00001d048301_P001 | Maize | cytosol | 12.76 | 20.33 |
| Zm00001d024406_P002 | Maize | nucleus | 17.97 | 19.27 |
| Zm00001d026248_P001 | Maize | nucleus | 18.75 | 18.95 |
| AT1G36950.1 | Thale cress | cytosol | 10.42 | 17.7 |
| Zm00001d027868_P004 | Maize | cytosol | 12.24 | 17.41 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 17.97 | 17.38 |
| Zm00001d045517_P001 | Maize | mitochondrion, nucleus | 11.72 | 16.79 |
| Zm00001d053212_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 11.98 | 16.03 |
| Zm00001d006226_P001 | Maize | peroxisome | 12.5 | 15.09 |
| Zm00001d021314_P005 | Maize | cytosol, mitochondrion, nucleus | 12.5 | 14.91 |
| Zm00001d011541_P004 | Maize | nucleus | 19.79 | 14.34 |
| Zm00001d009571_P002 | Maize | nucleus | 18.75 | 14.06 |
| Zm00001d015289_P001 | Maize | nucleus | 19.53 | 13.25 |
| Zm00001d002624_P003 | Maize | cytosol | 11.46 | 13.1 |
| Zm00001d014609_P002 | Maize | nucleus | 19.53 | 12.82 |
| Zm00001d008649_P003 | Maize | cytosol | 17.19 | 12.52 |
| Zm00001d025027_P002 | Maize | nucleus | 21.88 | 12.07 |
| Zm00001d004300_P003 | Maize | nucleus | 21.61 | 11.96 |
| Zm00001d039769_P002 | Maize | cytosol | 16.93 | 11.8 |
| Zm00001d002080_P002 | Maize | nucleus | 20.31 | 11.76 |
| Zm00001d026445_P001 | Maize | nucleus | 20.05 | 11.76 |
| Zm00001d015323_P002 | Maize | cytosol | 3.39 | 11.5 |
| Zm00001d039015_P002 | Maize | cytosol | 10.16 | 9.54 |
| Zm00001d037536_P006 | Maize | mitochondrion, plastid | 10.42 | 6.5 |
Protein Annotations
| EnsemblPlants:Zm00001d038909_P001 | EnsemblPlants:Zm00001d038909_T001 | EnsemblPlantsGene:Zm00001d038909 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF63 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:AQK88216.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0008438C2A | UniProt:A0A1D6MBT2 |
| MapMan:35.1 | : | : | : | : | : |
Description
Putative RING zinc finger domain superfamily protein
Coordinates
chr6:+:166809707..166813310
Molecular Weight (calculated)
42343.3 Da
IEP (calculated)
9.920
GRAVY (calculated)
-0.552
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MARDGGSRGS PGAERRRVAL RALLASGGAE AEAARTSSKG LLRGLRCTSA AASQAIAPEI PRPPADWRGL GCAAAAQAHA PAAAVEAARP TADWRRLGCA
101: AGAAPAVQAQ APRRSEEWRV RRRRNERERR KARAGGVSGG GGASAGMGVG GDVWCTPGIP FAAEASSVDC VVAPHHTVAA RRRAEADRPR RERPGAPPAR
201: RVTMREHMSS SPLSSPPHHV MPFVDVDRAP SGRIRHVSGR RHSHARVEEE VDTWVFMFFQ MMFQTRMLLG RMGIYDQYQD WRLDVDNMTY EELLDLEDRI
301: GYVSTGLRED EIIQSLRMVK YSAFNPRHFS TEMDRRCSIC QEEFEVHEET GKLSCGHSYH VHCIKQWLSR KNACPVCKTT VSKT
101: AGAAPAVQAQ APRRSEEWRV RRRRNERERR KARAGGVSGG GGASAGMGVG GDVWCTPGIP FAAEASSVDC VVAPHHTVAA RRRAEADRPR RERPGAPPAR
201: RVTMREHMSS SPLSSPPHHV MPFVDVDRAP SGRIRHVSGR RHSHARVEEE VDTWVFMFFQ MMFQTRMLLG RMGIYDQYQD WRLDVDNMTY EELLDLEDRI
301: GYVSTGLRED EIIQSLRMVK YSAFNPRHFS TEMDRRCSIC QEEFEVHEET GKLSCGHSYH VHCIKQWLSR KNACPVCKTT VSKT
001: MPVSAEPSSS SSTTIGQHMR LQRPRNHRNL PPISTADEPL IPKPSRVSKS AMSSFFLLPE TTKKKPNGTA SFRGLGCTTS ASQQVSVPAV IRSSADWDAS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS
Arabidopsis Description
Putative RING zinc finger protein; 69105-67310 [Source:UniProtKB/TrEMBL;Acc:Q9C9T6]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.