Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99218 | Sorghum | nucleus | 92.57 | 92.57 |
| TraesCS5A01G312800.1 | Wheat | cytosol, nucleus, plastid | 81.14 | 83.04 |
| TraesCS5B01G313800.1 | Wheat | cytosol, nucleus, plastid | 81.14 | 83.04 |
| TraesCS5D01G319600.1 | Wheat | cytosol, nucleus, plastid | 81.14 | 83.04 |
| HORVU5Hr1G080540.5 | Barley | nucleus | 74.86 | 76.16 |
| Zm00001d048301_P001 | Maize | cytosol | 42.86 | 31.12 |
| Zm00001d045517_P001 | Maize | mitochondrion, nucleus | 41.71 | 27.24 |
| Zm00001d027868_P004 | Maize | cytosol | 41.71 | 27.04 |
| Zm00001d002624_P003 | Maize | cytosol | 43.43 | 22.62 |
| Zm00001d026446_P001 | Maize | cytosol | 21.14 | 20.11 |
| Zm00001d015453_P001 | Maize | cytosol | 13.14 | 17.83 |
| Zm00001d006226_P001 | Maize | peroxisome | 31.43 | 17.3 |
| Zm00001d021314_P005 | Maize | cytosol, mitochondrion, nucleus | 31.43 | 17.08 |
| Zm00001d053212_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 28.0 | 17.07 |
| Zm00001d013776_P001 | Maize | cytosol | 12.57 | 17.05 |
| Zm00001d019616_P001 | Maize | cytosol | 12.57 | 17.05 |
| Zm00001d011636_P001 | Maize | nucleus | 24.0 | 12.43 |
| Zm00001d043784_P002 | Maize | nucleus | 23.43 | 11.85 |
| Zm00001d015323_P002 | Maize | cytosol | 7.43 | 11.5 |
| Zm00001d024406_P002 | Maize | nucleus | 22.86 | 11.17 |
| Zm00001d026248_P001 | Maize | nucleus | 22.86 | 10.53 |
| Zm00001d038909_P001 | Maize | cytosol, mitochondrion | 22.86 | 10.42 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 20.57 | 9.07 |
| Zm00001d008649_P003 | Maize | cytosol | 26.29 | 8.73 |
| Zm00001d039769_P002 | Maize | cytosol | 26.29 | 8.35 |
| Zm00001d009571_P002 | Maize | nucleus | 22.86 | 7.81 |
| Zm00001d015289_P001 | Maize | nucleus | 25.14 | 7.77 |
| Zm00001d011541_P004 | Maize | nucleus | 21.71 | 7.17 |
| Zm00001d025027_P002 | Maize | nucleus | 26.29 | 6.61 |
| Zm00001d026445_P001 | Maize | nucleus | 24.57 | 6.56 |
| Zm00001d002080_P002 | Maize | nucleus | 24.57 | 6.49 |
| Zm00001d004300_P003 | Maize | nucleus | 25.71 | 6.48 |
| Zm00001d014609_P002 | Maize | nucleus | 21.14 | 6.32 |
| Zm00001d039015_P002 | Maize | cytosol | 11.43 | 4.89 |
| Zm00001d037536_P006 | Maize | mitochondrion, plastid | 11.43 | 3.25 |
Protein Annotations
| EntrezGene:100193125 | Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:B4FDW4 | EMBL:BT035302 | EMBL:EU960107 |
| EMBL:EU961369 | InterPro:IPR001841 | InterPro:IPR013083 | ProteinID:ONM56565.1 | ProteinID:ONM56567.1 | ProteinID:ONM56568.1 |
| ProteinID:ONM56569.1 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF150 | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI00017B6603 | EnsemblPlantsGene:Zm00001d021225 | EnsemblPlants:Zm00001d021225_P002 | EnsemblPlants:Zm00001d021225_T002 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | : | : | : | : | : |
Description
RING/U-box superfamily protein
Coordinates
chr7:-:146550796..146554881
Molecular Weight (calculated)
19738.1 Da
IEP (calculated)
5.105
GRAVY (calculated)
-0.568
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPTTYSVR ISSETHKIEA WVVSDEALAR QLQEEENTRD AAADTREVAG NVPLESSSPA VEYRPAQNAA QVAREDNVDP DNMSYEQLQA LGEAVGIQSR
101: GLSDELISYL EPFRNKCTFF SRKKNSEECV ICKTTYRSRQ KLIRLPCSHC YHADCITRWL KINKACPVCN EEVFG
101: GLSDELISYL EPFRNKCTFF SRKKNSEECV ICKTTYRSRQ KLIRLPCSHC YHADCITRWL KINKACPVCN EEVFG
001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
Arabidopsis Description
BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.