Factsheet for Zm00001d024406_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80147	Sorghum	nucleus	84.64	84.64
Os08t0241400-00	Rice	nucleus	59.22	56.23
Zm00001d026248_P001	Maize	nucleus	47.77	45.0
Zm00001d002416_P002	Maize	endoplasmic reticulum, extracellular, vacuole	48.04	43.32
Zm00001d013776_P001	Maize	cytosol	12.01	33.33
Zm00001d015453_P001	Maize	cytosol	12.01	33.33
Zm00001d019616_P001	Maize	cytosol	12.01	33.33
Zm00001d026446_P001	Maize	cytosol	16.2	31.52
Bra024009.1-P	Field mustard	nucleus	13.41	27.43
CDY13429	Canola	cytosol	18.72	25.97
CDX97032	Canola	plastid	23.74	25.37
CDY71882	Canola	plastid	24.02	24.57
Zm00001d021225_P002	Maize	cytosol	11.17	22.86
CDX85750	Canola	nucleus	24.58	22.8
CDY40109	Canola	nucleus	10.89	20.97
Zm00001d011636_P001	Maize	nucleus	19.27	20.41
Zm00001d043784_P002	Maize	nucleus	19.27	19.94
CDX95473	Canola	nucleus	25.14	19.4
Zm00001d048301_P001	Maize	cytosol	12.85	19.09
CDX70363	Canola	nucleus	25.7	18.93
CDX97044	Canola	nucleus	26.26	18.43
CDX78393	Canola	nucleus	25.42	18.42
Bra006070.1-P	Field mustard	nucleus	25.42	18.38
Zm00001d038909_P001	Maize	cytosol, mitochondrion	19.27	17.97
KRH04957	Soybean	nucleus	26.54	17.86
KRH16134	Soybean	nucleus	27.65	17.84
Zm00001d015323_P002	Maize	cytosol	5.59	17.7
AT5G10650.2	Thale cress	nucleus	25.7	17.52
CDY68658	Canola	nucleus	22.91	17.48
VIT_04s0008g02390.t01	Wine grape	nucleus	26.82	17.45
Bra009015.1-P	Field mustard	plastid	25.98	17.45
CDX69813	Canola	mitochondrion	25.7	17.26
KRH52597	Soybean	nucleus	25.98	17.19
CDX88140	Canola	nucleus	22.91	17.01
AT5G24870.2	Thale cress	nucleus	24.58	16.92
Zm00001d015289_P001	Maize	nucleus	26.54	16.78
Solyc12g096420.1.1	Tomato	nucleus	25.42	16.52
PGSC0003DMT400067670	Potato	nucleus	24.3	16.48
Solyc08g006460.2.1	Tomato	nucleus	24.3	16.38
Zm00001d053212_P002	Maize	cytosol, mitochondrion, nucleus, plastid	13.13	16.38
PGSC0003DMT400075959	Potato	nucleus	24.86	16.33
CDY63645	Canola	nucleus	20.95	16.23
Zm00001d045517_P001	Maize	mitochondrion, nucleus	12.01	16.04
Bra024007.1-P	Field mustard	nucleus	20.67	15.85
CDY13433	Canola	nucleus	20.39	15.67
Zm00001d014609_P002	Maize	nucleus	25.42	15.56
AT4G31450.2	Thale cress	nucleus	21.51	15.49
Zm00001d027868_P004	Maize	cytosol	11.45	15.19
Zm00001d006226_P001	Maize	peroxisome	13.41	15.09
Zm00001d021314_P005	Maize	cytosol, mitochondrion, nucleus	12.85	14.29
Zm00001d008649_P003	Maize	cytosol	20.39	13.85
KRH61936	Soybean	nucleus	20.95	13.46
Zm00001d039769_P002	Maize	cytosol	20.67	13.43
Zm00001d011541_P004	Maize	nucleus	19.55	13.21
Bra009800.1-P	Field mustard	nucleus	14.8	12.93
Zm00001d002624_P003	Maize	cytosol	11.73	12.5
Zm00001d009571_P002	Maize	nucleus	17.6	12.3
Zm00001d002080_P002	Maize	nucleus	20.95	11.31
Zm00001d026445_P001	Maize	nucleus	20.11	10.99
Zm00001d025027_P002	Maize	nucleus	20.95	10.78
Zm00001d004300_P003	Maize	nucleus	20.39	10.52
Zm00001d039015_P002	Maize	cytosol	9.22	8.07
Zm00001d037536_P006	Maize	mitochondrion, plastid	10.61	6.18

Protein Annotations

EMBL:EU961893	EnsemblPlants:Zm00001d024406_P002	EnsemblPlants:Zm00001d024406_T002	EnsemblPlantsGene:Zm00001d024406	EntrezGene:100282675	Gene3D:3.30.40.10
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF44
PFAM:PF13639	PFscan:PS50089	ProteinID:AQK41123.1	ProteinID:AQK41124.1	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI000182CFF6	UniProt:B6TA78	MapMan:35.1	:	:

Description

Protein binding protein%3B Putative RING zinc finger domain superfamily protein isoform 1%3B Putative RING zinc finger domain superfamily protein isoform 2

Coordinates

chr10:+:69199906..69204296

Molecular Weight (calculated)

40019.3 Da

IEP (calculated)

8.126

GRAVY (calculated)

-0.891

Length

358 amino acids

Sequence
(BLAST)

001: MGETMGRRTV SGLLVTKGGS ILVFREESPR HKATACCTRL WCSSKLFPNK DTNTRRASRE TSALQRSQVS RKSNWMSHQG SISYDRSTSR NTASTFGETH
101: NKPREKENLG CDLPARLKER INTSRKSSLG GLGSPNKSST NTSSSSRSVS RSVCRPASRM RKDGGRGAES MRMHRARDSG GSSWGDVLTR NSDQDSSHRS
201: LSRNVLRHRS RSQQGPISSL EDNLDDSSEY WHFDTDDSEE VEDDYAFNDQ HRGMRMDIDN MSYEDLLALG ERIGTVSTGL SDDALSECLK RNLYVPTTSS
301: SNEDGDIKCI ICLEEYSSGV EVAKMACEHY YHTTCIQQWL QQKNWCPICK CDASAISS

Best Arabidopsis Sequence Match ( AT5G24870.1 )
(BLAST)

001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS

Arabidopsis Description

At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.