Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES11283 | Sorghum | nucleus | 63.39 | 86.23 |
| Os04t0571200-01 | Rice | nucleus | 51.79 | 68.5 |
| TraesCS2B01G418300.1 | Wheat | cytosol | 50.3 | 66.8 |
| TraesCS2A01G400200.1 | Wheat | nucleus | 50.0 | 66.4 |
| TraesCS2D01G397800.1 | Wheat | cytosol | 48.81 | 63.81 |
| HORVU2Hr1G094980.4 | Barley | cytosol | 49.4 | 62.64 |
| Zm00001d021225_P002 | Maize | cytosol | 22.62 | 43.43 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 37.5 | 37.17 |
| VIT_12s0028g01220.t01 | Wine grape | nucleus | 23.21 | 35.62 |
| Solyc03g026150.2.1 | Tomato | nucleus | 24.4 | 34.6 |
| PGSC0003DMT400037132 | Potato | nucleus | 24.11 | 33.89 |
| Zm00001d048301_P001 | Maize | cytosol | 23.21 | 32.37 |
| Zm00001d045517_P001 | Maize | mitochondrion, nucleus | 25.0 | 31.34 |
| Zm00001d027868_P004 | Maize | cytosol | 24.4 | 30.37 |
| Bra022579.1-P | Field mustard | cytosol | 9.82 | 25.0 |
| CDY27083 | Canola | nucleus | 16.07 | 24.66 |
| CDX91624 | Canola | nucleus | 16.07 | 24.55 |
| AT5G52150.1 | Thale cress | cytosol, nucleus, peroxisome | 14.58 | 24.5 |
| Zm00001d053212_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 19.35 | 22.65 |
| Zm00001d006226_P001 | Maize | peroxisome | 20.54 | 21.7 |
| AT5G52140.1 | Thale cress | nucleus | 17.86 | 21.43 |
| Zm00001d026446_P001 | Maize | cytosol | 11.61 | 21.2 |
| Bra022580.1-P | Field mustard | cytosol | 11.31 | 21.11 |
| CDY00512 | Canola | nucleus | 16.96 | 20.88 |
| CDX91625 | Canola | cytosol | 13.99 | 20.52 |
| CDY31919 | Canola | nucleus | 16.67 | 20.51 |
| Zm00001d021314_P005 | Maize | cytosol, mitochondrion, nucleus | 19.64 | 20.5 |
| AT5G52155.1 | Thale cress | nucleus | 11.01 | 20.33 |
| CDY27082 | Canola | cytosol | 13.39 | 18.91 |
| Zm00001d015453_P001 | Maize | cytosol | 7.14 | 18.6 |
| Zm00001d013776_P001 | Maize | cytosol | 6.85 | 17.83 |
| Zm00001d019616_P001 | Maize | cytosol | 6.85 | 17.83 |
| Bra028293.1-P | Field mustard | nucleus | 11.61 | 16.32 |
| Zm00001d011636_P001 | Maize | nucleus | 12.8 | 12.72 |
| Zm00001d043784_P002 | Maize | nucleus | 12.2 | 11.85 |
| Zm00001d024406_P002 | Maize | nucleus | 12.5 | 11.73 |
| Zm00001d038909_P001 | Maize | cytosol, mitochondrion | 13.1 | 11.46 |
| Zm00001d026248_P001 | Maize | nucleus | 11.9 | 10.53 |
| Zm00001d011541_P004 | Maize | nucleus | 15.77 | 10.0 |
| Zm00001d009571_P002 | Maize | nucleus | 14.88 | 9.77 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 11.01 | 9.32 |
| Zm00001d008649_P003 | Maize | cytosol | 13.69 | 8.73 |
| Zm00001d039769_P002 | Maize | cytosol | 13.39 | 8.17 |
| Zm00001d015289_P001 | Maize | nucleus | 13.69 | 8.13 |
| Zm00001d015323_P002 | Maize | cytosol | 2.68 | 7.96 |
| Zm00001d025027_P002 | Maize | nucleus | 16.37 | 7.9 |
| Zm00001d039015_P002 | Maize | cytosol | 9.52 | 7.82 |
| Zm00001d004300_P003 | Maize | nucleus | 16.07 | 7.78 |
| Zm00001d002080_P002 | Maize | nucleus | 15.18 | 7.69 |
| Zm00001d026445_P001 | Maize | nucleus | 14.58 | 7.48 |
| Zm00001d014609_P002 | Maize | nucleus | 11.9 | 6.84 |
| Zm00001d037536_P006 | Maize | mitochondrion, plastid | 8.93 | 4.88 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A1D6E2F2 | InterPro:BB | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0040007 | GO:GO:0046621 | InterPro:IPR001841 | InterPro:IPR013083 |
| ProteinID:ONM14815.1 | ProteinID:ONM14816.1 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF75 |
| SUPFAM:SSF57850 | UniParc:UPI000844EB08 | EnsemblPlantsGene:Zm00001d002624 | EnsemblPlants:Zm00001d002624_P003 | EnsemblPlants:Zm00001d002624_T003 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
RING/U-box superfamily protein
Coordinates
chr2:-:17078108..17087531
Molecular Weight (calculated)
37907.8 Da
IEP (calculated)
6.508
GRAVY (calculated)
-0.459
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MYLLGNKSGK KKVYVDYMNV PLPYAIEENY GGRFFDDDDD LAQVLQDQEI LYHLIQGSNG GGSSRTHSIP SSSYGHDRTS NAQKLSGDVN CECELQLAVD
101: EALARELHEM ESKLANTSLN DNNGRKTTSS SAFDRGNNSA SRPPQVLEED VIDPDNMTYE ELQQLGEAIG TQSKGLPESV IALLPTSTYK TGIFSRKEKH
201: DECVICCMAY KNRDRLTKLP CGHHYHQACV AKWLQINKVM RRIAQGPYHG QISDISSESN KISAFELFDI QSFRLGATLQ SFLSSPVYYS FQYLVSSPFS
301: ILSGMLQLGL KQREMLKFRH WYFFKVAAIV FSKWSE
101: EALARELHEM ESKLANTSLN DNNGRKTTSS SAFDRGNNSA SRPPQVLEED VIDPDNMTYE ELQQLGEAIG TQSKGLPESV IALLPTSTYK TGIFSRKEKH
201: DECVICCMAY KNRDRLTKLP CGHHYHQACV AKWLQINKVM RRIAQGPYHG QISDISSESN KISAFELFDI QSFRLGATLQ SFLSSPVYYS FQYLVSSPFS
301: ILSGMLQLGL KQREMLKFRH WYFFKVAAIV FSKWSE
001: MSQSLNQDAI DEAIALDLQF DDLYLTINDQ YIALKIKQNE EAMSIQADED YAKMLQLQED EETAKTLHAM EENPPNIPQS DVPSTSRDTS GLNDGDRRQD
101: QPTLVVNQTA IENNNPGNGS GESTEVVNKE GLPENIISGL PTQKYSRKTW WWSKKTFVPD RKECSICIAD YEKGDKITIL PCKHAFHKDC IANWLKENKV
101: QPTLVVNQTA IENNNPGNGS GESTEVVNKE GLPENIISGL PTQKYSRKTW WWSKKTFVPD RKECSICIAD YEKGDKITIL PCKHAFHKDC IANWLKENKV
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LTK5]
SUBAcon: [cytosol,nucleus,peroxisome]
SUBAcon: [cytosol,nucleus,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.