Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022580.1-P | Field mustard | cytosol | 45.05 | 45.56 |
| CDX91625 | Canola | cytosol | 50.0 | 39.74 |
| CDY27082 | Canola | cytosol | 46.7 | 35.71 |
| AT5G52140.1 | Thale cress | nucleus | 42.31 | 27.5 |
| AT5G52150.1 | Thale cress | cytosol, nucleus, peroxisome | 26.37 | 24.0 |
| AT3G63530.2 | Thale cress | cytosol | 26.37 | 19.35 |
| PGSC0003DMT400037132 | Potato | nucleus | 23.08 | 17.57 |
| Solyc03g026150.2.1 | Tomato | nucleus | 22.53 | 17.3 |
| VIT_12s0028g01220.t01 | Wine grape | nucleus | 20.33 | 16.89 |
| Os04t0571200-01 | Rice | nucleus | 23.08 | 16.54 |
| TraesCS2A01G400200.1 | Wheat | nucleus | 21.43 | 15.41 |
| TraesCS2B01G418300.1 | Wheat | cytosol | 21.43 | 15.41 |
| EES11283 | Sorghum | nucleus | 20.88 | 15.38 |
| TraesCS2D01G397800.1 | Wheat | cytosol | 21.43 | 15.18 |
| HORVU2Hr1G094980.4 | Barley | cytosol | 20.88 | 14.34 |
| AT4G00070.1 | Thale cress | nucleus | 12.64 | 12.85 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 21.98 | 11.8 |
| Zm00001d002624_P003 | Maize | cytosol | 20.33 | 11.01 |
| AT3G47180.1 | Thale cress | cytosol | 12.64 | 10.95 |
| AT1G36950.1 | Thale cress | cytosol | 13.19 | 10.62 |
| AT3G19910.1 | Thale cress | nucleus | 19.23 | 10.29 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 19.23 | 9.54 |
| AT1G17970.1 | Thale cress | nucleus | 16.48 | 8.15 |
| AT4G31450.2 | Thale cress | nucleus | 20.33 | 7.44 |
| AT1G53190.1 | Thale cress | nucleus | 18.13 | 6.68 |
| AT3G15070.1 | Thale cress | nucleus | 16.48 | 6.17 |
| AT5G24870.2 | Thale cress | nucleus | 17.58 | 6.15 |
| AT5G10650.2 | Thale cress | nucleus | 16.48 | 5.71 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 16.48 | 5.01 |
| AT5G42940.1 | Thale cress | nucleus | 17.58 | 4.63 |
| AT1G45180.3 | Thale cress | nucleus | 15.93 | 4.5 |
| AT2G15530.4 | Thale cress | nucleus | 18.13 | 4.23 |
| AT4G34040.1 | Thale cress | nucleus | 15.38 | 4.2 |
Protein Annotations
| EntrezGene:28721267 | Gene3D:3.30.40.10 | MapMan:35.2 | UniProt:A0A1P8BFJ4 | ProteinID:ANM70388.1 | ArrayExpress:AT5G52155 |
| EnsemblPlantsGene:AT5G52155 | EnsemblPlants:AT5G52155.1 | InterPro:BB | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0016874 | GO:GO:0019538 | GO:GO:0040007 | GO:GO:0046621 | InterPro:IPR001841 | InterPro:IPR013083 |
| RefSeq:NP_001332002.1 | PFAM:PF17123 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF75 | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI0008489D19 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
E3 ubiquitin ligase BIG BROTHER-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BFJ4]
Coordinates
chr5:-:21192097..21194086
Molecular Weight (calculated)
21409.1 Da
IEP (calculated)
8.583
GRAVY (calculated)
-0.747
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MFRNRAYNFH GCQACIVNSQ YHGCPCCRQS QYHSPYCSTP FFHLHDVPST SGRFYGYNSY GNSSPDQHTL RRSSSDISLH SFYNEGLNEV EASVGDESGG
101: VPEWKISKFR THKYGKKLKF RWWWQKKKKF VADDSQCSIC LVDYEKGDKI MTLPCNHIYH KDCISYWFKE NRVCCVCKRE VY
101: VPEWKISKFR THKYGKKLKF RWWWQKKKKF VADDSQCSIC LVDYEKGDKI MTLPCNHIYH KDCISYWFKE NRVCCVCKRE VY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.