Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26006 | Canola | nucleus | 78.95 | 84.42 |
| Bra039659.1-P | Field mustard | nucleus | 77.33 | 83.04 |
| CDY24110 | Canola | nucleus | 77.13 | 82.83 |
| Bra038109.1-P | Field mustard | nucleus | 76.52 | 78.75 |
| CDY25871 | Canola | nucleus | 75.91 | 78.45 |
| CDY55839 | Canola | nucleus | 75.91 | 76.69 |
| AT3G15070.1 | Thale cress | nucleus | 53.85 | 54.73 |
| VIT_19s0014g01850.t01 | Wine grape | nucleus | 38.66 | 35.5 |
| KRH22017 | Soybean | nucleus | 33.6 | 31.44 |
| KRH55161 | Soybean | nucleus | 28.74 | 31.0 |
| KRH30071 | Soybean | cytosol | 21.46 | 30.81 |
| VIT_03s0088g01090.t01 | Wine grape | nucleus | 28.14 | 30.42 |
| VIT_03s0088g00930.t01 | Wine grape | nucleus, plastid | 24.09 | 30.28 |
| KRH26195 | Soybean | nucleus | 27.94 | 30.13 |
| Solyc12g014070.1.1 | Tomato | nucleus | 32.39 | 29.91 |
| PGSC0003DMT400054921 | Potato | nucleus | 30.97 | 29.48 |
| PGSC0003DMT400039631 | Potato | nucleus | 31.98 | 29.48 |
| Solyc10g007140.2.1 | Tomato | nucleus | 30.77 | 29.29 |
| VIT_03s0097g00680.t01 | Wine grape | nucleus | 24.9 | 29.22 |
| KRH55165 | Soybean | nucleus | 16.8 | 26.69 |
| KRH55090 | Soybean | nucleus | 19.23 | 25.54 |
| AT4G00070.1 | Thale cress | nucleus | 7.69 | 21.23 |
| AT3G47180.1 | Thale cress | cytosol | 8.7 | 20.48 |
| AT3G63530.2 | Thale cress | cytosol | 10.12 | 20.16 |
| TraesCS3B01G272400.4 | Wheat | nucleus | 21.26 | 19.89 |
| EES03404 | Sorghum | nucleus | 20.85 | 19.77 |
| TraesCS3A01G246900.3 | Wheat | nucleus | 21.05 | 19.73 |
| TraesCS3D01G244600.1 | Wheat | nucleus | 21.05 | 19.7 |
| Os01t0667700-02 | Rice | nucleus | 20.85 | 19.66 |
| HORVU3Hr1G061010.4 | Barley | nucleus | 20.65 | 19.39 |
| Os05t0564300-01 | Rice | nucleus | 19.43 | 19.2 |
| Zm00001d011541_P004 | Maize | nucleus | 20.45 | 19.06 |
| HORVU1Hr1G087900.1 | Barley | cytosol | 19.84 | 18.85 |
| AT5G52140.1 | Thale cress | nucleus | 10.53 | 18.57 |
| AT5G52155.1 | Thale cress | nucleus | 6.68 | 18.13 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 21.86 | 18.03 |
| Solyc07g062720.1.1 | Tomato | nucleus | 28.14 | 17.94 |
| KXG22536 | Sorghum | nucleus | 18.42 | 17.91 |
| AT4G31450.2 | Thale cress | nucleus | 18.02 | 17.91 |
| Zm00001d009571_P002 | Maize | nucleus | 18.42 | 17.77 |
| PGSC0003DMT400032385 | Potato | nucleus | 29.15 | 17.73 |
| TraesCS1D01G405800.9 | Wheat | cytosol | 18.62 | 17.56 |
| TraesCS1A01G398300.8 | Wheat | cytosol | 19.03 | 17.44 |
| TraesCS1B01G426200.9 | Wheat | cytosol | 19.23 | 17.34 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 12.15 | 16.35 |
| AT5G52150.1 | Thale cress | cytosol, nucleus, peroxisome | 6.48 | 16.0 |
| AT5G10650.2 | Thale cress | nucleus | 16.8 | 15.81 |
| AT1G17970.1 | Thale cress | nucleus | 11.74 | 15.76 |
| AT5G24870.2 | Thale cress | nucleus | 16.19 | 15.38 |
| AT1G45180.3 | Thale cress | nucleus | 19.23 | 14.73 |
| AT5G42940.1 | Thale cress | nucleus | 20.45 | 14.62 |
| Zm00001d039015_P002 | Maize | cytosol | 11.94 | 14.43 |
| AT1G36950.1 | Thale cress | cytosol | 6.48 | 14.16 |
| AT3G19910.1 | Thale cress | nucleus | 9.72 | 14.12 |
| AT4G34040.1 | Thale cress | nucleus | 18.02 | 13.36 |
| AT2G15530.4 | Thale cress | nucleus | 18.42 | 11.67 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:841753 | ProteinID:AEE32904.1 | ProteinID:AEE32905.1 | ArrayExpress:AT1G53190 |
| EnsemblPlantsGene:AT1G53190 | RefSeq:AT1G53190 | TAIR:AT1G53190 | RefSeq:AT1G53190-TAIR-G | EnsemblPlants:AT1G53190.1 | TAIR:AT1G53190.1 |
| Unigene:At.43317 | EMBL:BT020580 | EMBL:BT029187 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0060776 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 |
| RefSeq:NP_001031177.1 | RefSeq:NP_175727.2 | PFAM:PF13639 | PO:PO:0000293 | PFscan:PS50089 | PANTHER:PTHR22937 |
| PANTHER:PTHR22937:SF48 | UniProt:Q5EAI9 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0000163115 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
At1g53190 [Source:UniProtKB/TrEMBL;Acc:Q5EAI9]
Coordinates
chr1:+:19837110..19840370
Molecular Weight (calculated)
55126.4 Da
IEP (calculated)
6.664
GRAVY (calculated)
-0.748
Length
494 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQRNRNVDL EMEQQQSQAS LQAEPCILLG SFPQQPDNNN MPAMVAHVPN LEPHSLQDPT YDNSAMFYGL PQYHHHPHQR VPTNFYVPYV AFQAPPGQLP
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.