Factsheet for HORVU1Hr1G087900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G405800.9	Wheat	cytosol	86.35	85.69
TraesCS1A01G398300.8	Wheat	cytosol	87.5	84.42
TraesCS1B01G426200.9	Wheat	cytosol	87.5	83.03
Os05t0564300-01	Rice	nucleus	53.27	55.4
KXG22536	Sorghum	nucleus	49.81	50.98
Zm00001d009571_P002	Maize	nucleus	49.04	49.8
Zm00001d039015_P002	Maize	cytosol	38.08	48.41
HORVU3Hr1G061010.4	Barley	nucleus	42.88	42.4
HORVU3Hr1G054920.1	Barley	cytosol	4.62	26.09
HORVU5Hr1G080540.5	Barley	nucleus	6.92	20.93
CDY24110	Canola	nucleus	18.46	20.87
Bra039659.1-P	Field mustard	nucleus	18.46	20.87
CDY26006	Canola	nucleus	18.46	20.78
CDY25871	Canola	nucleus	18.46	20.08
VIT_19s0014g01850.t01	Wine grape	nucleus	20.77	20.07
Bra038109.1-P	Field mustard	nucleus	18.46	20.0
PGSC0003DMT400039631	Potato	nucleus	20.58	19.96
AT1G53190.1	Thale cress	nucleus	18.85	19.84
Solyc12g014070.1.1	Tomato	nucleus	20.38	19.81
CDY55839	Canola	nucleus	18.46	19.63
HORVU3Hr1G064370.1	Barley	plastid	14.42	19.48
PGSC0003DMT400054921	Potato	nucleus	18.85	18.88
CDY68521	Canola	nucleus	15.96	18.82
CDX75805	Canola	cytosol	15.96	18.74
KRH30071	Soybean	cytosol	12.31	18.6
CDX82450	Canola	nucleus	15.96	18.53
AT3G15070.1	Thale cress	nucleus	17.31	18.52
Solyc10g007140.2.1	Tomato	nucleus	18.46	18.5
HORVU2Hr1G101370.5	Barley	nucleus	13.27	18.4
KRH26195	Soybean	nucleus	16.15	18.34
KRH55165	Soybean	nucleus	10.96	18.33
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	13.85	18.32
KRH22017	Soybean	nucleus	18.46	18.18
KRH55161	Soybean	nucleus	15.96	18.12
Bra001582.1-P	Field mustard	nucleus	15.19	18.08
VIT_03s0097g00680.t01	Wine grape	nucleus	14.62	18.05
Bra027282.1-P	Field mustard	nucleus	15.38	17.98
VIT_03s0088g01090.t01	Wine grape	nucleus	15.77	17.94
CDX97629	Canola	nucleus	15.0	17.69
HORVU1Hr1G082970.1	Barley	plastid	12.69	17.51
HORVU7Hr1G009940.2	Barley	nucleus	7.88	17.23
KRH55090	Soybean	nucleus	11.92	16.67
HORVU2Hr1G094980.4	Barley	cytosol	8.46	16.6
HORVU1Hr1G024190.2	Barley	nucleus	16.92	16.39
HORVU7Hr1G057310.5	Barley	cytosol, nucleus, plastid	8.46	14.72
HORVU4Hr1G055690.5	Barley	peroxisome, plastid	9.81	14.49
HORVU2Hr1G113970.2	Barley	cytosol, nucleus	15.96	14.36
HORVU7Hr1G098540.1	Barley	nucleus	15.96	14.16
HORVU2Hr1G113930.2	Barley	nucleus	17.69	14.07
HORVU5Hr1G082790.2	Barley	nucleus	8.65	13.01
HORVU3Hr1G018800.2	Barley	cytosol, plastid	14.62	12.9
Solyc07g062720.1.1	Tomato	nucleus	19.04	12.77
HORVU6Hr1G022370.10	Barley	mitochondrion	16.15	12.09
HORVU2Hr1G003340.5	Barley	nucleus	16.35	12.04
PGSC0003DMT400032385	Potato	nucleus	18.27	11.7
HORVU3Hr1G054870.1	Barley	cytosol, mitochondrion	5.96	7.23

Protein Annotations

EnsemblPlants:HORVU1Hr1G087900.1	EnsemblPlantsGene:HORVU1Hr1G087900	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF67	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000294EBA6	UniProt:M0X7J7	MapMan:35.1	:

Description

No Description!

Coordinates

chrchr1H:-:540584485..540593818

Molecular Weight (calculated)

56192.9 Da

IEP (calculated)

6.321

GRAVY (calculated)

-0.647

Length

520 amino acids

Sequence
(BLAST)

001: MSQRNMSWTH QGANPETEEG QLQPENSNNG GTGSNLSNQG VQVALGVPGN TANDGVRDSR SYYESINNHR QHAQNLYPYA GVDPSFVYPS NMYNPGMPTP
101: SANRYVPHAS FGQGNPPPSP SYHQVATGTM DESSSSSSFG DATRESMKTK NAVAESGHHF DHGFASSSSS AHVPQHPAQG TWGPSFESHG APNGSSADGP
201: NRSTQMATHP ALVRHGNYVF PAGHMGQGNT WNTQPVNVIA DGVPHWAYNN SVHNPSGQFA HPGTMGMPNG RLQDYQAGPS ATFHGSLPHF NQIPVHSTQT
301: PAMLNHIQMQ GPQRQSNVVQ GANPSGMVQG ANPSGMVQGA NPSRMVFTWD PCLPFSSSGH TNGPPVHAFL TDQVYHGSIR FLQQAAMATM STFYDAIHLI
401: DEQWDMGLDI DSMTYEELLA LQEQIGDVNT GLPERHIRQN LRVDPYVVPG AARGSDQSVE KDACIICQEE YEAEEVVGTL DCGHKYHAAC IRQWLMMKNL
501: CPICKAAALP AERSGGDRRQ

Best Arabidopsis Sequence Match ( AT3G15070.2 )
(BLAST)

001: MRQRNMMTGS DMEQNSQSFV PHPEPRIGTN YLYPDIPPVN TVPHLEAHSL QEPYDNNSMF YGPPQYHHQH ASNLGSGMST APNFYVPYVN YEAPPSFLLS
101: HGSNDAVVGV TSTEHERNAH FMDHGFKRKS SEVIPGNSQY PVAPCSFPQL NTSETAPFSF PHFGTYPQPL DQRSVRNRAG AATMDPLLSH GHNNFSQGNY
201: AAHPFPPLGS IWYDQHCNGN RSDGSSSLWS QAPAVPYMHG NIATGSIESG NVCFPRYHET SSSRNPTPSV YQRNHYISHH PVPPPPIVYP HMPSASYAET
301: LHPASYSHMG QVQSTGFRIN QYPGEDFVPA AILRHRELPH FRAMPANENA FWEVGDFYNA VNYVDHHQDM RLDIEDMSYE ELLALSDQIG TVKTGLSSED
401: VKELLKRRTS TRINLEEGPS TDLETDSCTI CQENYKNEDK IATLDCMHKY HAECLKKWLV IKNVCPICKS EALVIEKKKK LRLSSR

Arabidopsis Description

At3g15070/K15M2_22 [Source:UniProtKB/TrEMBL;Acc:Q94F54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.