Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G405800.9 | Wheat | cytosol | 91.84 | 94.47 |
| TraesCS1B01G426200.9 | Wheat | cytosol | 92.95 | 91.42 |
| HORVU1Hr1G087900.1 | Barley | cytosol | 84.42 | 87.5 |
| Os05t0564300-01 | Rice | nucleus | 51.02 | 55.0 |
| KXG22536 | Sorghum | nucleus | 47.68 | 50.59 |
| Zm00001d009571_P002 | Maize | nucleus | 46.75 | 49.22 |
| Zm00001d039015_P002 | Maize | cytosol | 36.18 | 47.68 |
| TraesCS3A01G246900.3 | Wheat | nucleus | 40.63 | 41.56 |
| TraesCS5A01G312800.1 | Wheat | cytosol, nucleus, plastid | 6.86 | 21.64 |
| TraesCS1A01G373200.1 | Wheat | nucleus | 13.54 | 20.92 |
| TraesCS4A01G112900.1 | Wheat | nucleus | 9.65 | 20.8 |
| CDY24110 | Canola | nucleus | 17.44 | 20.43 |
| Bra039659.1-P | Field mustard | nucleus | 17.44 | 20.43 |
| CDY26006 | Canola | nucleus | 17.44 | 20.35 |
| TraesCS3A01G260500.1 | Wheat | nucleus | 12.99 | 20.29 |
| VIT_19s0014g01850.t01 | Wine grape | nucleus | 20.22 | 20.26 |
| Solyc12g014070.1.1 | Tomato | nucleus | 19.67 | 19.81 |
| PGSC0003DMT400039631 | Potato | nucleus | 19.67 | 19.78 |
| CDY25871 | Canola | nucleus | 17.44 | 19.67 |
| Bra038109.1-P | Field mustard | nucleus | 17.44 | 19.58 |
| CDY55839 | Canola | nucleus | 17.44 | 19.22 |
| AT1G53190.1 | Thale cress | nucleus | 17.44 | 19.03 |
| VIT_03s0088g00930.t01 | Wine grape | nucleus, plastid | 13.73 | 18.83 |
| KRH30071 | Soybean | cytosol | 11.69 | 18.31 |
| VIT_03s0097g00680.t01 | Wine grape | nucleus | 14.29 | 18.29 |
| VIT_03s0088g01090.t01 | Wine grape | nucleus | 15.4 | 18.16 |
| KRH26195 | Soybean | nucleus | 15.4 | 18.12 |
| CDX82450 | Canola | nucleus | 15.03 | 18.08 |
| CDX75805 | Canola | cytosol | 14.84 | 18.06 |
| KRH22017 | Soybean | nucleus | 17.63 | 17.99 |
| PGSC0003DMT400054921 | Potato | nucleus | 17.25 | 17.92 |
| CDY68521 | Canola | nucleus | 14.66 | 17.91 |
| Bra001582.1-P | Field mustard | nucleus | 14.47 | 17.85 |
| AT3G15070.1 | Thale cress | nucleus | 15.96 | 17.7 |
| KRH55161 | Soybean | nucleus | 15.03 | 17.69 |
| KRH55165 | Soybean | nucleus | 10.2 | 17.68 |
| TraesCS2A01G437200.1 | Wheat | nucleus | 12.06 | 17.62 |
| Solyc10g007140.2.1 | Tomato | nucleus | 16.88 | 17.53 |
| TraesCS7A01G271500.1 | Wheat | cytosol, mitochondrion, nucleus | 9.28 | 17.36 |
| TraesCS1A01G107600.1 | Wheat | nucleus | 17.07 | 17.13 |
| Bra027282.1-P | Field mustard | nucleus | 14.1 | 17.08 |
| TraesCS4A01G441400.1 | Wheat | nucleus | 7.79 | 16.8 |
| TraesCS2A01G400200.1 | Wheat | nucleus | 7.79 | 16.6 |
| CDX97629 | Canola | nucleus | 13.54 | 16.55 |
| TraesCS7A01G054700.2 | Wheat | nucleus | 7.61 | 16.27 |
| KRH55090 | Soybean | nucleus | 11.13 | 16.13 |
| TraesCS3A01G103000.1 | Wheat | nucleus | 13.73 | 14.26 |
| TraesCS2A01G514400.3 | Wheat | nucleus | 16.51 | 13.3 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 14.29 | 13.21 |
| Solyc07g062720.1.1 | Tomato | nucleus | 18.37 | 12.77 |
| TraesCS2A01G022100.1 | Wheat | nucleus | 16.33 | 12.55 |
| PGSC0003DMT400032385 | Potato | nucleus | 18.0 | 11.95 |
| TraesCS5A01G325400.2 | Wheat | nucleus | 8.16 | 11.89 |
| TraesCS7A01G428300.2 | Wheat | nucleus | 11.69 | 10.84 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G398300.8 | EnsemblPlantsGene:TraesCS1A01G398300 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF67 | PFAM:PF13639 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16481 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr1A:+:563680807..563683724
Molecular Weight (calculated)
58215.5 Da
IEP (calculated)
6.502
GRAVY (calculated)
-0.600
Length
539 amino acids
Sequence
(BLAST)
(BLAST)
001: MPHRNMCWTH QGDNLESEEG QAQPENYNNG GTGSNLSNQG VQVALGVPGN TTSDGVHDSR SYYESINNQR QHAQNLYPYG GVDPSFVYPS TMYNPGMPTP
101: SVNRYVPHAS FGQGNPPPSP SYHQVATGAR DVSSSSSSFG DATRQSMKTR NAVTESGHHF DHGFASSSSS AHVPQNPAQW TWCASFESHG APNGSSADGP
201: NRPSPMATHP ALVRHGNYVF PAGHMGQGNT WTTHPANVIA DGVPHWAYNN AVHNPSGQFA HPGTMGMQNG SLQDYQAGPS ATFHGPLPHF NQIPMHSMQT
301: PAMLNHIQMQ GPQRQSNVVQ GANPSGMVQG ANPSGMVQGT NPSGMVQGGN PSGMVQGANP AGMVQGANPS RRAFTWDPCL PFSSSGHTNG PPVHAFFTDQ
401: VYNGSVRLLQ QAAMATMSTF YDAIHLIDEQ WDMGLDIDSM TYEDLLALQE QIGDVHTGLP ERYIRQNLRV RQYVVPRAAR GSDQSVEKDA CIICQEEFEA
501: RELVGTLDCG HKYHEACIKQ WLMVKNLCPI CKATALPAE
101: SVNRYVPHAS FGQGNPPPSP SYHQVATGAR DVSSSSSSFG DATRQSMKTR NAVTESGHHF DHGFASSSSS AHVPQNPAQW TWCASFESHG APNGSSADGP
201: NRPSPMATHP ALVRHGNYVF PAGHMGQGNT WTTHPANVIA DGVPHWAYNN AVHNPSGQFA HPGTMGMQNG SLQDYQAGPS ATFHGPLPHF NQIPMHSMQT
301: PAMLNHIQMQ GPQRQSNVVQ GANPSGMVQG ANPSGMVQGT NPSGMVQGGN PSGMVQGANP AGMVQGANPS RRAFTWDPCL PFSSSGHTNG PPVHAFFTDQ
401: VYNGSVRLLQ QAAMATMSTF YDAIHLIDEQ WDMGLDIDSM TYEDLLALQE QIGDVHTGLP ERYIRQNLRV RQYVVPRAAR GSDQSVEKDA CIICQEEFEA
501: RELVGTLDCG HKYHEACIKQ WLMVKNLCPI CKATALPAE
001: MRQRNMMTGS DMEQNSQSFV PHPEPRIGTN YLYPDIPPVN TVPHLEAHSL QEPYDNNSMF YGPPQYHHQH ASNLGSGMST APNFYVPYVN YEAPPSFLLS
101: HGSNDAVVGV TSTEHERNAH FMDHGFKRKS SEVIPGNSQY PVAPCSFPQL NTSETAPFSF PHFGTYPQPL DQRSVRNRAG AATMDPLLSH GHNNFSQGNY
201: AAHPFPPLGS IWYDQHCNGN RSDGSSSLWS QAPAVPYMHG NIATGSIESG NVCFPRYHET SSSRNPTPSV YQRNHYISHH PVPPPPIVYP HMPSASYAET
301: LHPASYSHMG QVQSTGFRIN QYPGEDFVPA AILRHRELPH FRAMPANENA FWEVGDFYNA VNYVDHHQDM RLDIEDMSYE ELLALSDQIG TVKTGLSSED
401: VKELLKRRTS TRINLEEGPS TDLETDSCTI CQENYKNEDK IATLDCMHKY HAECLKKWLV IKNVCPICKS EALVIEKKKK LRLSSR
101: HGSNDAVVGV TSTEHERNAH FMDHGFKRKS SEVIPGNSQY PVAPCSFPQL NTSETAPFSF PHFGTYPQPL DQRSVRNRAG AATMDPLLSH GHNNFSQGNY
201: AAHPFPPLGS IWYDQHCNGN RSDGSSSLWS QAPAVPYMHG NIATGSIESG NVCFPRYHET SSSRNPTPSV YQRNHYISHH PVPPPPIVYP HMPSASYAET
301: LHPASYSHMG QVQSTGFRIN QYPGEDFVPA AILRHRELPH FRAMPANENA FWEVGDFYNA VNYVDHHQDM RLDIEDMSYE ELLALSDQIG TVKTGLSSED
401: VKELLKRRTS TRINLEEGPS TDLETDSCTI CQENYKNEDK IATLDCMHKY HAECLKKWLV IKNVCPICKS EALVIEKKKK LRLSSR
Arabidopsis Description
At3g15070/K15M2_22 [Source:UniProtKB/TrEMBL;Acc:Q94F54]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.