Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G082790.2 | Barley | nucleus | 82.16 | 87.86 |
| TraesCS5D01G286700.1 | Wheat | nucleus | 25.68 | 80.51 |
| Os09t0535100-01 | Rice | nucleus | 65.95 | 75.08 |
| EER97094 | Sorghum | nucleus | 65.14 | 74.38 |
| TraesCS5B01G279200.1 | Wheat | cytosol | 24.32 | 73.77 |
| Zm00001d021314_P005 | Maize | cytosol, mitochondrion, nucleus | 63.24 | 72.67 |
| Zm00001d006226_P001 | Maize | peroxisome | 62.16 | 72.33 |
| TraesCS7A01G271500.1 | Wheat | cytosol, mitochondrion, nucleus | 52.7 | 67.71 |
| GSMUA_Achr4P05140_001 | Banana | nucleus | 45.95 | 57.43 |
| GSMUA_Achr3P26700_001 | Banana | nucleus | 44.59 | 56.51 |
| VIT_10s0042g00580.t01 | Wine grape | nucleus | 40.0 | 48.05 |
| GSMUA_Achr9P24150_001 | Banana | nucleus | 37.3 | 45.85 |
| GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 37.57 | 45.28 |
| CDY25357 | Canola | nucleus | 38.92 | 45.0 |
| CDY24595 | Canola | nucleus | 38.11 | 44.76 |
| AT3G19910.1 | Thale cress | nucleus | 41.08 | 44.71 |
| CDY42218 | Canola | nucleus | 40.0 | 44.31 |
| GSMUA_Achr4P04290_001 | Banana | nucleus | 26.49 | 44.14 |
| Bra022466.1-P | Field mustard | nucleus | 38.65 | 44.14 |
| Bra038240.1-P | Field mustard | nucleus | 39.46 | 43.84 |
| KRG90628 | Soybean | nucleus | 39.19 | 43.28 |
| CDY33429 | Canola | nucleus | 38.38 | 43.03 |
| KRH36126 | Soybean | cytosol, mitochondrion, nucleus | 38.92 | 40.56 |
| TraesCS5A01G312800.1 | Wheat | cytosol, nucleus, plastid | 14.59 | 31.58 |
| TraesCS4A01G112900.1 | Wheat | nucleus | 21.08 | 31.2 |
| TraesCS2A01G400200.1 | Wheat | nucleus | 18.65 | 27.27 |
| TraesCS4A01G441400.1 | Wheat | nucleus | 15.14 | 22.4 |
| TraesCS7A01G054700.2 | Wheat | nucleus | 15.14 | 22.22 |
| TraesCS1A01G373200.1 | Wheat | nucleus | 12.7 | 13.47 |
| TraesCS3A01G260500.1 | Wheat | nucleus | 12.16 | 13.04 |
| TraesCS2A01G437200.1 | Wheat | nucleus | 12.7 | 12.74 |
| TraesCS3A01G246900.3 | Wheat | nucleus | 13.78 | 9.68 |
| TraesCS3A01G103000.1 | Wheat | nucleus | 13.51 | 9.63 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 14.86 | 9.43 |
| TraesCS1A01G107600.1 | Wheat | nucleus | 12.7 | 8.75 |
| TraesCS2A01G514400.3 | Wheat | nucleus | 15.68 | 8.67 |
| TraesCS2A01G022100.1 | Wheat | nucleus | 15.95 | 8.42 |
| TraesCS1A01G398300.8 | Wheat | cytosol | 11.89 | 8.16 |
| TraesCS7A01G428300.2 | Wheat | nucleus | 12.43 | 7.92 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G325400.2 | EnsemblPlantsGene:TraesCS5A01G325400 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF172 | PFAM:PF17123 | PFscan:PS50089 | SEG:seg |
| SUPFAM:SSF57850 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:536119256..536125005
Molecular Weight (calculated)
40343.3 Da
IEP (calculated)
3.864
GRAVY (calculated)
-0.836
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSKGSDGG GGERPGADHN PSPDQPPPVA APGGGDDAAA AAAAAAALAE DDARRPFTAL SQVDADLALA RVLQEQERAY MMLRMNGVGG GGGEGSDYGS
101: SEAGSYEYDE DAEEDYEEEL ENHLRVHHHE HPGGGEGDGD DDLEADGEGE GEGQDEGSEE SEYEEEGFDE DEEVEDVELD PAEYEDDEAY ARALQDAEER
201: EVAARLMALA GISEWRAVEH VEDHINDAQD SWQEVDPDEY SYEELVALGD VVGTESRGLS ADTLASLPSV TYKTKDMQDG NTEQCVICRV EFEEGESLVA
301: LPCNHSYHPD CINQWLQINK LTMCRYALCV AQKFLPQQTS RHDQQSLVNQ LHLQKKKRKT NQLLALCGSM
101: SEAGSYEYDE DAEEDYEEEL ENHLRVHHHE HPGGGEGDGD DDLEADGEGE GEGQDEGSEE SEYEEEGFDE DEEVEDVELD PAEYEDDEAY ARALQDAEER
201: EVAARLMALA GISEWRAVEH VEDHINDAQD SWQEVDPDEY SYEELVALGD VVGTESRGLS ADTLASLPSV TYKTKDMQDG NTEQCVICRV EFEEGESLVA
301: LPCNHSYHPD CINQWLQINK LTMCRYALCV AQKFLPQQTS RHDQQSLVNQ LHLQKKKRKT NQLLALCGSM
001: MPMENDNGPH VGNVVVTAEQ ATKINETDGR LPENRQTGVV SDTGSGSERG EQGVGESAVA VAVPVEESGS ISVGELPAPR SSSARVPFTN LSQIDADLAL
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS
Arabidopsis Description
BBRE3 ubiquitin ligase BIG BROTHER-related [Source:UniProtKB/Swiss-Prot;Acc:Q9LT17]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.