Factsheet for VIT_10s0042g00580.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90628	Soybean	nucleus	66.88	61.49
KRH36126	Soybean	cytosol, mitochondrion, nucleus	63.96	55.49
TraesCS5D01G286700.1	Wheat	nucleus	20.78	54.24
OQU80744	Sorghum	mitochondrion	25.32	54.17
GSMUA_Achr4P05140_001	Banana	nucleus	50.32	52.36
CDY25357	Canola	nucleus	53.25	51.25
CDY24595	Canola	nucleus	51.95	50.79
TraesCS7A01G271500.1	Wheat	cytosol, mitochondrion, nucleus	47.08	50.35
Bra022466.1-P	Field mustard	nucleus	52.6	50.0
TraesCS5B01G279200.1	Wheat	cytosol	19.48	49.18
AT3G19910.1	Thale cress	nucleus	54.22	49.12
CDY42218	Canola	nucleus	52.92	48.8
Bra038240.1-P	Field mustard	nucleus	52.6	48.65
CDY33429	Canola	nucleus	51.95	48.48
HORVU7Hr1G057310.5	Barley	cytosol, nucleus, plastid	46.1	47.49
GSMUA_Achr3P26700_001	Banana	nucleus	44.81	47.26
Os09t0535100-01	Rice	nucleus	49.68	47.08
EER97094	Sorghum	nucleus	48.7	46.3
Os08t0548300-01	Rice	nucleus	45.78	46.23
TraesCS7B01G170500.1	Wheat	cytosol, mitochondrion, nucleus	44.81	46.15
TraesCS7D01G271800.4	Wheat	cytosol, mitochondrion, nucleus	44.81	46.0
TraesCS5D01G331600.1	Wheat	cytosol, mitochondrion, nucleus	50.65	45.88
Zm00001d006226_P001	Maize	peroxisome	46.75	45.28
EES15239	Sorghum	nucleus	46.1	45.22
HORVU5Hr1G082790.2	Barley	nucleus	49.35	43.93
Zm00001d053212_P002	Maize	cytosol, mitochondrion, nucleus, plastid	40.58	43.55
Zm00001d021314_P005	Maize	cytosol, mitochondrion, nucleus	45.13	43.17
GSMUA_Achr4P04180_001	Banana	mitochondrion, nucleus, peroxisome, plastid	42.53	42.67
VIT_18s0001g02280.t01	Wine grape	nucleus	27.92	41.55
GSMUA_Achr9P24150_001	Banana	nucleus	40.58	41.53
GSMUA_Achr4P04290_001	Banana	nucleus	29.87	41.44
TraesCS5B01G325800.1	Wheat	mitochondrion	50.65	41.27
TraesCS5A01G325400.2	Wheat	nucleus	48.05	40.0
VIT_07s0031g00400.t01	Wine grape	cytoskeleton, cytosol, nucleus	12.66	38.24
VIT_11s0118g00640.t01	Wine grape	nucleus	12.99	33.61
VIT_07s0031g00380.t01	Wine grape	cytosol	7.14	31.43
VIT_16s0022g00290.t01	Wine grape	nucleus	7.47	30.26
VIT_13s0064g01030.t01	Wine grape	nucleus	24.03	29.96
VIT_12s0028g01220.t01	Wine grape	nucleus	20.45	28.77
VIT_07s0031g00370.t01	Wine grape	mitochondrion	12.99	27.59
VIT_06s0004g01930.t01	Wine grape	nucleus	22.4	27.38
VIT_07s0031g00440.t01	Wine grape	nucleus	15.26	21.36
VIT_07s0031g00390.t01	Wine grape	nucleus	12.99	16.39
VIT_17s0000g03210.t01	Wine grape	nucleus	15.58	12.94
VIT_08s0040g02160.t01	Wine grape	nucleus	21.1	11.9
VIT_01s0011g04080.t01	Wine grape	nucleus	12.99	11.4
VIT_19s0014g01850.t01	Wine grape	nucleus	19.81	11.34
VIT_13s0019g04100.t01	Wine grape	extracellular	20.45	11.15
VIT_03s0097g00680.t01	Wine grape	nucleus	12.99	9.5
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	12.01	9.41
VIT_18s0001g10260.t01	Wine grape	nucleus	22.4	9.4
VIT_04s0008g02390.t01	Wine grape	nucleus	16.56	9.27
VIT_03s0088g01090.t01	Wine grape	nucleus	13.31	8.97
VIT_03s0063g00160.t01	Wine grape	nucleus	19.81	8.31

Protein Annotations

EntrezGene:100247631	wikigene:100247631	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:CBI29028	ProteinID:CBI29028.3
UniProt:D7TEV5	EMBL:FN595766	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100247631	wikigene:LOC100247631
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF166	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0001985B0D	ArrayExpress:VIT_10s0042g00580	EnsemblPlantsGene:VIT_10s0042g00580	EnsemblPlants:VIT_10s0042g00580.t01	unigene:Vvi.3292	RefSeq:XP_002270577
RefSeq:XP_002270577.2	RefSeq:XP_010655908.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr10:-:13534118..13544150

Molecular Weight (calculated)

33768.2 Da

IEP (calculated)

3.645

GRAVY (calculated)

-0.872

Length

308 amino acids

Sequence
(BLAST)

001: MENNNITTTN SKLDSDEPKS VATATAAEEQ NPNSPAAEDP NPNSNQAPPR QSSRTPFTNL SQVDADLALA RTLQEQERAY MMLRINGEGS DYGSWEAGSY
101: FNEEEFDDPN DGTDVDDGVD DEDEDEGEYD GTDEDAFDVH AQADDGEDDN PTIEFDPAVF SSDEAYARAL QHIEEQEMAA RLLALAGIHD HGVEDTEDHG
201: GNSQDTWEEV DPDELSYEEL LALGEVIGTE SRGLSSDTIA SLPSVTYKAQ SNQEGSNDSC VICRLDYEDG ETLTVLSCKH SYHSECINNW LQINKVCPIC
301: STEVSSSR

Best Arabidopsis Sequence Match ( AT3G19910.1 )
(BLAST)

001: MPMENDNGPH VGNVVVTAEQ ATKINETDGR LPENRQTGVV SDTGSGSERG EQGVGESAVA VAVPVEESGS ISVGELPAPR SSSARVPFTN LSQIDADLAL
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS

Arabidopsis Description

BBRE3 ubiquitin ligase BIG BROTHER-related [Source:UniProtKB/Swiss-Prot;Acc:Q9LT17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.