Factsheet for VIT_07s0031g00400.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
mitochondrion 1
cytoskeleton 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0031g00380.t01	Wine grape	cytosol	59.8	87.14
VIT_07s0031g00370.t01	Wine grape	mitochondrion	75.49	53.1
VIT_11s0118g00640.t01	Wine grape	nucleus	51.96	44.54
VIT_16s0022g00290.t01	Wine grape	nucleus	29.41	39.47
VIT_07s0031g00390.t01	Wine grape	nucleus	72.55	30.33
VIT_07s0031g00440.t01	Wine grape	nucleus	59.8	27.73
VIT_18s0001g02280.t01	Wine grape	nucleus	39.22	19.32
VIT_06s0004g01930.t01	Wine grape	nucleus	40.2	16.27
VIT_12s0028g01220.t01	Wine grape	nucleus	33.33	15.53
VIT_17s0000g03210.t01	Wine grape	nucleus	54.9	15.09
VIT_13s0064g01030.t01	Wine grape	nucleus	35.29	14.57
VIT_01s0011g04080.t01	Wine grape	nucleus	50.0	14.53
Solyc09g007620.1.1	Tomato	nucleus	23.53	13.71
PGSC0003DMT400095772	Potato	cytosol	23.53	12.9
VIT_10s0042g00580.t01	Wine grape	nucleus	38.24	12.66
VIT_19s0014g01850.t01	Wine grape	nucleus	52.94	10.04
VIT_08s0040g02160.t01	Wine grape	nucleus	51.96	9.71
VIT_04s0008g02390.t01	Wine grape	nucleus	51.96	9.64
VIT_13s0019g04100.t01	Wine grape	extracellular	51.96	9.38
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	33.33	8.65
VIT_03s0063g00160.t01	Wine grape	nucleus	59.8	8.31
VIT_18s0001g10260.t01	Wine grape	nucleus	58.82	8.17
VIT_03s0097g00680.t01	Wine grape	nucleus	32.35	7.84
VIT_03s0088g01090.t01	Wine grape	nucleus	33.33	7.44

Protein Annotations

ArrayExpress:VIT_07s0031g00400	EMBL:AM445444	EMBL:FN595233	EnsemblPlants:VIT_07s0031g00400.t01	EnsemblPlantsGene:VIT_07s0031g00400	Gene3D:3.30.40.10
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF464
PFAM:PF13639	PFscan:PS50089	ProteinID:CAN71989	ProteinID:CAN71989.1	ProteinID:CBI21406	ProteinID:CBI21406.3
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00015C9F7F	UniProt:D7SVV7	MapMan:35.1	:

Description

No Description!

Coordinates

chr7:+:16623222..16623766

Molecular Weight (calculated)

11167.2 Da

IEP (calculated)

4.194

GRAVY (calculated)

-0.096

Length

102 amino acids

Sequence
(BLAST)

001: MHLDIDSMSY EELLALGEHI GSVSTGLSEE VIMAKMEQWK YSCSKTGSSV DAEICCICQE EYADDDGVGN LDCGHVYHVA CIKEWLAQKN SCPICKNTAL
101: AT

Best Arabidopsis Sequence Match ( AT4G34040.1 )
(BLAST)

001: MQGPRSTGDS STGINYADGE PICSTNSETT SNNILNPVDV QFPNNTTGSG RPTYASSSSH VVQNHNWWSF GESSSRLGPS DHLNSNGSKT DRQLLSDGYG
101: FEEGQSGMLL PGESFLRGSS SSHMLSHVNL GKDMDIGSGL QTSGVVIRHN NCETSLGSSS QTAEERSSGP GSSLGGLGSS CKRKALEGAP SHSFPGESHG
201: CFFQTENGAW NEGLAQYDAS SSLSLSMPSQ NSPNVNNQSG LPEPRFGLGG GRAVTASAFP STRSTETISR PGRRLNPGQP PESVAFSFTQ SGSSVRQQQQ
301: LPATSPFVDP LDARAIPVTG SSSSGDGQPS MIHLPALTRN IHQFAWSASS SSRANSMPEE GLSPWDAPRI NSEQPVFTTP ANETRNPVQD QFCWSFTRGN
401: PSTSGDSPFV PRAGSSSGIH GLQPNPTWVT PHNQSRISEV APWSLFPSIE SESATHGASL PLLPTGPSVS SNEAAAPSGS SSRSHRSRQR RSGLLLERQN
501: DHLHLRHLGR SLAADNDGRN RLISEIRQVL SAMRRGENLR FEDYMVFDPL IYQGMAEMHD RHRDMRLDVD NMSYEELLAL GERIGDVSTG LSEEVILKVM
601: KQHKHTSSAA GSHQDMEPCC VCQEEYAEGD DLGTLGCGHE FHTACVKQWL MLKNLCPICK TVALST

Arabidopsis Description

MBR2E3 ubiquitin-protein ligase MBR2 [Source:UniProtKB/Swiss-Prot;Acc:O49500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.